Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00076 ATGACGGCTATTTCTTCTCCTCTAACTGTTATCTCTGCCGTGGGACCTTTTCTTTCACGATCCCGCCGTCGTTCAACCACGGCCGTCCGATCCAGCACAGTGTCAATTGGACCAACCAGATTATTAACGAAACTTAAACAGGATTGTCACACTCCTCTTCCTCTTCTTCAGCAAGTTGCAGATACCATGTCTTCTCAAATGCGGGCCGGGCTTTCCTCTGATGATGATGGGCTCGGCCTTCCCATGATACCCACTTTTGTCCACACTCTTCCCACCGGGAATGAGAAAGGGTTGTTTTATGCATTGGATCTTGGTGGAACAAATTTTCGTGTGTTGAGGGTACAATTAGGTGGCAAAGATGATCGTGTCATTTCCACCGAATTTGATCAAGTTTCTATACCTCATGATCTCATGTTTGCTACATCCGAGGAGCTGTTTGACTTCATTGCTTTGGGGCTAGCCAAATTTGTGGCTAAAGAAGATGATAGATTTCATTTTCAACAAGGAAGAAAAAGAGAGATTGGTTTCACATTTTCATTTCCTGTGAAACAAACTTCTATTGACTCTGGCATACTCATCAAGTGGACTAAGGGTTTTGCTGTCTCTGGAACTGTTGGAAGAGATGTGGTTGCTTGTTTGAATGAGGCAATGGAAAGACAAGGACTAGATATGCGAGTTTCTGCTCTGGTTAATGATACTGTTGGAACACTAGCCGGGGCAGAATACTGGGACAGTGATGTTAAGGTTGCTGTTATTTTAGGTACTGGAACCAATGCTTGCTATATTGAGCAGATAAGTTCCATTCCAAAATTACAAGGCCATGCCTCTTCTTTTGGTAAAATGATCATTAGTACTGAATGGGGAGCTTTCTCAAATGGTCTACCTTTAACTGAATTTGATAGAGAAATGGATGCTGCCAGCATCAACCCTGGTCAACAGATCTTTGAGAAGACAATCTCAGGAATGTATCTAGGTGAAATTGTGAGACGAGTTCTATTCAATATGGCTGAAGAGGAAGGTTTGTTTGGAATATCTGTCCCTCAAAAACTGTCTACGCCATTCATACTCGGGACCCCAGATCTATGCGCCATGCAGCAGGATAGTTCTGGCGATTTACATGCAGTTGGATCCCTCCTCTATGAAAAAGCTGGGGTTGAATCCAATCTAGGCGAAAGAAAAACCGTTCTAGAGGTTTGTGAGACAATTGTAAAACGAGGCGGTAGCTTAGCTGGTGCAGGAATTGTAGGAATTTTGCAGAAAATGGAAGAGGATTCAAAAGGTCTTATCTTTGGAAAGAGAAGTGTTGTTGCCATTGATGGGGGTTTGTATGAAAATTATCCTCAATACAGGACTTACTTGCAAGGTTCAGTAAAAGAAATATTAGGAACAGAAAAGTCAAACAATGTTGTGATAGAACATTCAAAAGATGGTTCTGGTATTGGAGGTGCTCTATTGGCAGCTTCAAATTCCATGTACAGCCAAGAATAA 1488 0.422 MTAISSPLTVISAVGPFLSRSRRRSTTAVRSSTVSIGPTRLLTKLKQDCHTPLPLLQQVADTMSSQMRAGLSSDDDGLGLPMIPTFVHTLPTGNEKGLFYALDLGGTNFRVLRVQLGGKDDRVISTEFDQVSIPHDLMFATSEELFDFIALGLAKFVAKEDDRFHFQQGRKREIGFTFSFPVKQTSIDSGILIKWTKGFAVSGTVGRDVVACLNEAMERQGLDMRVSALVNDTVGTLAGAEYWDSDVKVAVILGTGTNACYIEQISSIPKLQGHASSFGKMIISTEWGAFSNGLPLTEFDREMDAASINPGQQIFEKTISGMYLGEIVRRVLFNMAEEEGLFGISVPQKLSTPFILGTPDLCAMQQDSSGDLHAVGSLLYEKAGVESNLGERKTVLEVCETIVKRGGSLAGAGIVGILQKMEEDSKGLIFGKRSVVAIDGGLYENYPQYRTYLQGSVKEILGTEKSNNVVIEHSKDGSGIGGALLAASNSMYSQE 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00076 495 PRINTS Hexokinase family signature 174 199 - -
Trre1g00076 495 PRINTS Hexokinase family signature 249 263 - -
Trre1g00076 495 PRINTS Hexokinase family signature 395 417 - -
Trre1g00076 495 PRINTS Hexokinase family signature 472 488 - -
Trre1g00076 495 PRINTS Hexokinase family signature 100 116 - -
Trre1g00076 495 PRINTS Hexokinase family signature 226 242 - -
Trre1g00076 495 PRINTS Hexokinase family signature 313 335 - -
Trre1g00076 495 ProSiteProfiles Hexokinase domain profile. 36 487 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Trre1g00076 495 Gene3D - 85 486 - -
Trre1g00076 495 FunFam Phosphotransferase 85 253 - -
Trre1g00076 495 Pfam Hexokinase 43 242 IPR022672 GO:0005524|GO:0005975|GO:0016773
Trre1g00076 495 PANTHER HEXOKINASE 34 490 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Trre1g00076 495 CDD NBD_sugar-kinase_HSP70_actin 101 263 - -
Trre1g00076 495 Gene3D - 62 475 - -
Trre1g00076 495 SUPERFAMILY Actin-like ATPase domain 38 244 IPR043129 -
Trre1g00076 495 ProSitePatterns Hexokinase domain signature. 174 199 IPR019807 GO:0004396|GO:0005524|GO:0006096
Trre1g00076 495 SUPERFAMILY Actin-like ATPase domain 246 489 IPR043129 -
Trre1g00076 495 Pfam Hexokinase 248 487 IPR022673 GO:0005524|GO:0005975|GO:0016773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00076 Trre-Chr1 530928 533981 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00076 1 530928 533981 Trre1g00076 1 530928 533981 ECH