Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03810 ATGCCATCTTCGGATTCCGGTGAGAGCCGCCGATCAACCAAGCCACAAAACCGTCCAGGAGTACCTGCACCTGAGCAAGAGAATCTCCCATGTCCTCGTTGTGATTCAACCAACACTAAGTTCTGTTACTATAACAACTACAACTACTCTCAGCCTCGCCATTTCTGTAAGGGTTGTCGCCGCTACTGGACACAGGGAGGTACTCTTCGTGACATTCCCGTCGGCGGAGGTACCCGCAAAAACGCCAAACGCTCCCGAACTCAGCATATTGCGGTGACTTCCTCTTCTTCTTCCTCTGCTGTGACTTCTGCACCGGAGCACCACCATTATCAATCAATGACACCCATCTCTGCCGGACACGGTGGCTCTGTTCCGTACTGTGGTAGTGTTGACGGTGATGGAAAACAGAATATGAGTGTTTCTGGGAGCTTCACTTCTTTGCTGAACAACAACACTCAAGGGAACTCTGGATTTCTTGCTTTAGGTGGATTTGGGTTTGGGCTTGGACAAGGACTTGAAGAAATGGGCTTCGGGATTGGAAGAACCGGTTGGGCTTTTCCAGGAATGGTGGATGGATCAAACATTGGTGGTGTGCCTGTTGTGTCTTCTGGTGTCGGAAACTCATGGCAGTTAGATGGTGGCGAAGGTGGTTTTGTTGGCAGTGACTGTTTCTCTTGGCCTGGACTTGCAATTTCAACACCTGGAAATGGACTCAAATGA 720 0.4986 MPSSDSGESRRSTKPQNRPGVPAPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKGCRRYWTQGGTLRDIPVGGGTRKNAKRSRTQHIAVTSSSSSSAVTSAPEHHHYQSMTPISAGHGGSVPYCGSVDGDGKQNMSVSGSFTSLLNNNTQGNSGFLALGGFGFGLGQGLEEMGFGIGRTGWAFPGMVDGSNIGGVPVVSSGVGNSWQLDGGEGGFVGSDCFSWPGLAISTPGNGLK 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03810 239 MobiDBLite consensus disorder prediction 74 112 - -
Trre16g03810 239 MobiDBLite consensus disorder prediction 1 16 - -
Trre16g03810 239 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 155 IPR045174 GO:0003700|GO:0006355
Trre16g03810 239 MobiDBLite consensus disorder prediction 87 110 - -
Trre16g03810 239 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Trre16g03810 239 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Trre16g03810 239 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
Trre16g03810 239 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03810 Trre-Chr16 42970234 42970953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03810 1 239 C2C2-Dof Transcription Factor Family AT3G50410 48.263 3.28e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre16g03810 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03810 - - tpra:123881632 382.489