Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03797 ATGATCCAAGAACTCTTTGGTAATGGTGCTAGTGCTTCCTTCATAGCAAGTGAAAGAAACTACTCTTCCATTAATGGAGGAGGAGTTGGAGGAGTGTTACTTCAACAAACTACTCAATCTCCTTCTTCTTCTTCTCCATGTCCATCTTCCACATCCACAACCATAACCACCACCACCACCACCACACCGACCACCACCACCACATCAGAAAGCCAACAACATCTGAGGTGTCCAAGATGTGATTCATCAAACACAAAGTTTTGTTACTATAACAACTACAACCTCACTCAGCCACGCCATTTCTGCAAGACATGCCGTCGTTACTGGACAAAAGGCGGCGCTTTACGCAACGTCCCCATCGGAGGTGGCTGCCGGAAAAACAAAAGCATCGGCATGTCGAACACCGCGGCAAAAACAACAACAAACAAAATGAAAACAGTTGCTTCCGAGTTTATCAGGTCAGCAGGTAGTCAGGGGTTCGATCAGGTAGTGGCACCACCACCAAGTCAAATCCTTTGGGGTTCACCTCAAAATTCTCATCTACTTTCTTTGCTAAGATCTAGTCAAAACCAAAGCCCTAACCCTAATCCTGTTAAGGAAGAAGGAAATAATAACTTAAGGTCCCATATTTCTCACATGATGAGTTCTCAGCCGTTGATTTCATCAAATGTTTATGATGGTGGTGTTGGACATGTTTTATGCAACCCATTTTGGAGAAACAATCATGATAATCAAACTCAACAACTACTACAAAATAATAGTGTATTTGTACTTGGGGAACAACAACAACATCATCAGCATCATCAAAACAGTGGAATCCAAGAACTTTACCAGAAGCTAAGGTCATCAACAACATCATCATCAGGTAATAATTATTGCAGTGAAATTACAGCTTCACCAACAGTGTTACTAGGGAACGTGGCTTCTAATCCATCTTCTATATCAAATATTTTGGAGACAACTTCAGTTACTGGTGGTGAATTAGGGTACTGGAATCCAATTCCAACTCTTACTTGGTCTGATCTTCCAACCACCAATGGTGCATATCCATAA 1053 0.4179 MIQELFGNGASASFIASERNYSSINGGGVGGVLLQQTTQSPSSSSPCPSSTSTTITTTTTTTPTTTTTSESQQHLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSIGMSNTAAKTTTNKMKTVASEFIRSAGSQGFDQVVAPPPSQILWGSPQNSHLLSLLRSSQNQSPNPNPVKEEGNNNLRSHISHMMSSQPLISSNVYDGGVGHVLCNPFWRNNHDNQTQQLLQNNSVFVLGEQQQHHQHHQNSGIQELYQKLRSSTTSSSGNNYCSEITASPTVLLGNVASNPSSISNILETTSVTGGELGYWNPIPTLTWSDLPTTNGAYP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03797 350 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 63 274 IPR045174 GO:0003700|GO:0006355
Trre16g03797 350 Pfam Dof domain, zinc finger 73 129 IPR003851 GO:0003677|GO:0006355
Trre16g03797 350 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Trre16g03797 350 MobiDBLite consensus disorder prediction 32 73 - -
Trre16g03797 350 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03797 Trre-Chr16 42809231 42810283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03797 43 139 C2C2-Dof Transcription Factor Family AT5G65590 57.732 1.39e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre16g03797 zf-Dof 9.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03797 - - psat:127074489 499.204