Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02015 ATGGCACCAAATAATAACAACACCACACAAGATCATGACCAAAACAAAAACCAGCAACAACAAAAACAACAACAAGAAATTTCTTCTTCAAATACAAAGAAAAGACCATCATCGTCATCATCATCGGATGAACAAAAAGTTGCAATAAAATGTCCAAGATGTGACTCTCCCAACACAAAATTCTGTTACTACAATAACTACAGTCTCTCTCAACCAAGACATTTCTGCAAAACTTGTAGAAGATATTGGACAAATGGTGGATCTTTACGTAATGTTCCAATTGGTGGTGGTTGTAGAAAGAAACAAAAATTCAAACACTCATCTTCATCTTCTCAATCCATAATCTCTAAGTACTCTTCTTCATCTTCACTTGATTTTCATCTTGGTGGGTTATTACCTTTACCATTACCATTACCCTTTTCTTCAAAACTTCACCATCATCCAAATCATCAACCTTTTCTTAATAACCAATTCTCTTCAAGCTTTCAACTTGATCATTCTGTTATTACCTCAAATTCATTGATGGGGGGTGTAAATAGTTTATACCCTTTTTCTTCTTCAAATGGAATGAATCTCATGAATGTGGTGAATAGTACTACTAGTGGTGCTACTGGCACTGCTACTACTCTTGCTTCTAGTATTGAATCATTGAGTTGTATGAATCAAGATTTGCATTTGAAGCTTCAACAACAAAGATTAGCAACCATGTTTGTTTGTGATGATGATAACAAGAAAGATGGTATTATTAGTAGTAGCAGCAATGTTTTGGTTTCTGATCAGATTAGTAGCATTGAAAAGCCTCAACCAATTTTGTTTCAGAATCTTGAGATTTCAAAGACAAATGTTTCAAGTAGTGATGCACCAATGGAATGGTTGTTTGGGAATTCTTATTCTTCATTCATGATGACTCCTACAACAACATCTACTATTGGTGGTGTTTGCATTAATGGTGATCATGGTCATGCAAACAATAATAGTTGGATTAATAGTGGTGTTAATGCTTGGAATGATGTGCAGCAGCAGCAGCAACCATATACTGCTTTGCCCTAG 1050 0.3505 MAPNNNNTTQDHDQNKNQQQQKQQQEISSSNTKKRPSSSSSSDEQKVAIKCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTNGGSLRNVPIGGGCRKKQKFKHSSSSSQSIISKYSSSSSLDFHLGGLLPLPLPLPFSSKLHHHPNHQPFLNNQFSSSFQLDHSVITSNSLMGGVNSLYPFSSSNGMNLMNVVNSTTSGATGTATTLASSIESLSCMNQDLHLKLQQQRLATMFVCDDDNKKDGIISSSSNVLVSDQISSIEKPQPILFQNLEISKTNVSSSDAPMEWLFGNSYSSFMMTPTTTSTIGGVCINGDHGHANNNSWINSGVNAWNDVQQQQQPYTALP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02015 349 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Trre16g02015 349 MobiDBLite consensus disorder prediction 1 46 - -
Trre16g02015 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 231 IPR045174 GO:0003700|GO:0006355
Trre16g02015 349 Pfam Dof domain, zinc finger 49 103 IPR003851 GO:0003677|GO:0006355
Trre16g02015 349 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Trre16g02015 349 MobiDBLite consensus disorder prediction 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02015 Trre-Chr16 16124619 16125668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02015 29 349 C2C2-Dof Transcription Factor Family AT5G65590 38.068 3.65e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre16g02015 zf-Dof 8.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02015 - - tpra:123923236 449.514