Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01658 ATGTTCCAAGATCCTTCAATCAAGCTTTTTGGAAGTGATATTCAAATTCATATTCCCATTAACTCAACAGATTTACACTCTCAGATTCACTCTCTTCCACAACAACCCATCATTATCATGAATGAACTTGAAGAATCAACTAATGCTGATGTTGGTGTTCCTTTGAATCTAGTTTCTAGGAAACAAGCTAATCCTCAAGAAGATGCTAATGCTTTTCCAAACATGTATGAAACTGGCACTTCGAAACCGGCGACCAAAGCAGTTCATAGAACTAATGAACATAGGACTGCCAAAAGAGATACTGACAATCAAGAGAAAGCTTTCAAGAAACCAGACAAGGTTCTTCCGTGTCCTCGGTGCAATAGTTTGGAGACAAAGTTTTGTTATTTCAACAATTACAATGTTAACCAACCAAGACATTTCTGTAAAAAATGTCAGAGGTATTGGACAGCAGGGGGAGCAATTAGGAATGTTCCTATCGGAGCCGGTAAGCGTAGAAATAAGCATCCACCTATGCAGAATTGTCAAGTTCCTGTTACCCTTGATGTTGTACCTGTCATACACACAGATTCCAACCCTACTAGTCTCAATGAGGAAGTTCCTCTTAGTGAATCACTAGAAGTGTTAAATCTCAAGGGCCATCGAAAAATTGAAATCGACTTGTCCACTGTCAAAGAGGATATTGATGAACCTTCTCGCTCTTCCGCGAGAGCTGCCGAATCCGGCGAAATGGAGCATTCGGAAAATGGAATAGAGCATGTTGGTTTGACACCACAATACAATGGCTTAATTCCTTTGCATTCACTTCATTATTATTCTGCTCCTCCATGGACTTGTCAATGGAATCCATGTTGGAATCCTACGGCATTTAAGCCGGATAACATAACTTCAAATCCTGCAACCATGATGGCAGTAGAAATACCAATGGCACCTTCATCATATTGGGGTTGTGTGCCAAATTGGGTTGGCCAAATGGAAGAATTTAACGGCATTCCATCACCTTCATCTTCGGTTAGCAGCGGCACTTGTTCCGGCAATAGGTCACCAACTTTAGGAAAACATTGTAGAGATGGAAGTAAACAAGAAGAAGATACAATGAAGCCGAATATTTGGGTGCCTAAAACCATCAGAATTAACGATCCAGAAGAGGCGGCTAAGAGTTCTATATGGTCAACTTTAGCAACAAAATCTGAACAGAACAAACCAATTATGAAAGGAAGCGTTTTTAAATCATTTGAACCTAAGTCAAATGCAAATTCTCGTGATTTAGACGATAATCAAATCCTAAGAGCAAACCCTGCTGCTTTCTCTCGCTCAGGATCTTTCCAGGAAAGCATGTAA 1341 0.4019 MFQDPSIKLFGSDIQIHIPINSTDLHSQIHSLPQQPIIIMNELEESTNADVGVPLNLVSRKQANPQEDANAFPNMYETGTSKPATKAVHRTNEHRTAKRDTDNQEKAFKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKKCQRYWTAGGAIRNVPIGAGKRRNKHPPMQNCQVPVTLDVVPVIHTDSNPTSLNEEVPLSESLEVLNLKGHRKIEIDLSTVKEDIDEPSRSSARAAESGEMEHSENGIEHVGLTPQYNGLIPLHSLHYYSAPPWTCQWNPCWNPTAFKPDNITSNPATMMAVEIPMAPSSYWGCVPNWVGQMEEFNGIPSPSSSVSSGTCSGNRSPTLGKHCRDGSKQEEDTMKPNIWVPKTIRINDPEEAAKSSIWSTLATKSEQNKPIMKGSVFKSFEPKSNANSRDLDDNQILRANPAAFSRSGSFQESM 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01658 446 MobiDBLite consensus disorder prediction 412 446 - -
Trre16g01658 446 ProSitePatterns Zinc finger Dof-type signature. 117 153 IPR003851 GO:0003677|GO:0006355
Trre16g01658 446 PANTHER CYCLIC DOF FACTOR 2 3 445 IPR045174 GO:0003700|GO:0006355
Trre16g01658 446 MobiDBLite consensus disorder prediction 332 349 - -
Trre16g01658 446 ProSiteProfiles Zinc finger Dof-type profile. 115 169 IPR003851 GO:0003677|GO:0006355
Trre16g01658 446 MobiDBLite consensus disorder prediction 87 107 - -
Trre16g01658 446 MobiDBLite consensus disorder prediction 405 446 - -
Trre16g01658 446 MobiDBLite consensus disorder prediction 332 362 - -
Trre16g01658 446 Pfam Dof domain, zinc finger 112 169 IPR003851 GO:0003677|GO:0006355
Trre16g01658 446 MobiDBLite consensus disorder prediction 227 248 - -
Trre16g01658 446 MobiDBLite consensus disorder prediction 72 107 - -
Trre16g01658 446 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01658 Trre-Chr16 13252079 13254509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01658 80 445 C2C2-Dof Transcription Factor Family AT5G39660 38.168 2.31e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre16g01658 zf-Dof 3.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01658 - - cam:101489693 641.343