Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03960 ATGCCGTCTTCAGACTCCGGTGAGAGCCGCCGATCAACCAAACCTCAAAACCGTCCAGGAGCACCTGCACCTGAGCAAGAGAATCTCCCATGTCCTCGTTGTGATTCAACCAACACTAAGTTCTGTTACTACAACAACTATAACTACTCTCAGCCACGCCATTTCTGTAAGGGTTGTCGCCGCTACTGGACTCAGGGAGGTACTCTCCGTGACATCCCAGTCGGCGGAGGTACCCGCAAAAACGCCAAACGCTCTCGAACTCAGAATATTCCGGTGACTTCCTCCTCTTCTTCCTCTGCCGTGACTTCTGCACCGGAGCACCACCACTATCAATCAATGACACCCATCTCCGCCGGACACGGTGGCTCTGTTCCGTACTGTGGTAGCGTTGACGGTGATGGAAAACAGAATATGAGTGTTTCTGGGAGCTTCACTTCTTTGCTGAACAACAATACTCAAGGGAACTCTGGATTTCTTGCTTTAGGTGGATTTGGGTTTGGGCTTGGACAAGGGCTTGAAGAAATGGGCTTTGGGATTGGAAGAAGTGGTTGGGCTTTTCCGGGAATGGTGGATGGATCAAACATTGGTGGTGTGCCTGCTGTTGTGTCTTCAAACTCATGGCAGTTAGACGGCGGCGAAGGTGGTTTTGTTGGTGGTGACTGTTTCTCTTGGCCTGGACTTGCAATTTCAACACCTGGAAATGGTCTCAAATGA 714 0.5056 MPSSDSGESRRSTKPQNRPGAPAPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKGCRRYWTQGGTLRDIPVGGGTRKNAKRSRTQNIPVTSSSSSSAVTSAPEHHHYQSMTPISAGHGGSVPYCGSVDGDGKQNMSVSGSFTSLLNNNTQGNSGFLALGGFGFGLGQGLEEMGFGIGRSGWAFPGMVDGSNIGGVPAVVSSNSWQLDGGEGGFVGGDCFSWPGLAISTPGNGLK 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03960 237 MobiDBLite consensus disorder prediction 1 16 - -
Trre15g03960 237 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 162 IPR045174 GO:0003700|GO:0006355
Trre15g03960 237 MobiDBLite consensus disorder prediction 81 110 - -
Trre15g03960 237 MobiDBLite consensus disorder prediction 70 117 - -
Trre15g03960 237 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Trre15g03960 237 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Trre15g03960 237 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
Trre15g03960 237 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03960 Trre-Chr15 49706254 49706967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03960 1 237 C2C2-Dof Transcription Factor Family AT3G50410 50.000 5.60e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre15g03960 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03960 - - tpra:123881632 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03960 15 49706254 49706967 Trre15g03960 15 49706254 49706967 ECH