Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01933 ATGGCACCAAATAATAACAACACCTCAGAAGATCATGACCAAAACAAAAACCAACAACAACAACAAATTTCTTCTTCAAACACAAAGAAAAGACCATCAACATCATCATCATCGGATGAACAAAAAGTTGCAATAAAATGTCCAAGATGTGACTCTCCCAACACAAAATTCTGTTACTACAATAACTACAGTCTCTCTCAACCAAGACATTTCTGCAAAACTTGTAGAAGATATTGGACAAATGGTGGATCTTTACGTAATGTTCCAATTGGTGGTGGTTGCAGAAAGAAACAAAAATTCAAACACTCATCATCATCATCATCTATAATTTCTAAGTACTCTTCTTCATCTTCACTTGATTTTCATCTTGGTGGGTTATTACCCTTACCATTACCATTACCATTACCCTTTTCTTCAAAACTTCACCATCATCCAAATCATCAACCTTTTCTTAATAACCAATTCTCTTCAAGTTTTCAACTTGATCATTCTGTTATTACCTCAAATTCATTGATGGGGGGTGTAAAAAATTTATACCCTTTTTCTTCTTCAAATGGAATGAATATCATGAATGTGAATAGTACTACTACTAGTACTAGTGGTGGTGGTGGTGCTACTACTCTTGCTTCTAGTATTGAATCATTGAGTTGTATGAATCAAGATTTGCATTTGAAGCTTCAACAACAAAGATTAGCAACCAATTTTAGTAGTAGCAACAATGTTTTGGTTTCTGATCAGATTGAAAAGCCTCAACCAATTTTGTTTCAAAATCTTGAGATTTCAAAGACAAATGTTTCAACTAGTGATGCACCAATGGAATGGTTGTTTGGGAATTCTTATTCTTCATTCATGATGACTCCTACAACAACATCTACTATTGGTGGTGTTTGCATTAATGGTGAACATGATCATGCAAACAATAATAGTTGGATTAATAGTGGTGGTGTTAATGCTTGGAATGATGTGCAGCAGCAGCCATATACTGCTTTGCCCTAA 996 0.3444 MAPNNNNTSEDHDQNKNQQQQQISSSNTKKRPSTSSSSDEQKVAIKCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTNGGSLRNVPIGGGCRKKQKFKHSSSSSSIISKYSSSSSLDFHLGGLLPLPLPLPLPFSSKLHHHPNHQPFLNNQFSSSFQLDHSVITSNSLMGGVKNLYPFSSSNGMNIMNVNSTTTSTSGGGGATTLASSIESLSCMNQDLHLKLQQQRLATNFSSSNNVLVSDQIEKPQPILFQNLEISKTNVSTSDAPMEWLFGNSYSSFMMTPTTTSTIGGVCINGEHDHANNNSWINSGGVNAWNDVQQQPYTALP 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01933 331 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677|GO:0006355
Trre15g01933 331 MobiDBLite consensus disorder prediction 1 42 - -
Trre15g01933 331 Pfam Dof domain, zinc finger 45 99 IPR003851 GO:0003677|GO:0006355
Trre15g01933 331 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677|GO:0006355
Trre15g01933 331 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 232 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01933 Trre-Chr15 15644206 15645201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01933 25 331 C2C2-Dof Transcription Factor Family AT5G65590 40.994 3.93e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre15g01933 zf-Dof 7.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01933 - - tpra:123923236 447.588