Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01731 ATGGCAAAACTAGTTCCCACTTTAGTTCATCCATTGAAATCAAAGTTTTTCAGTAATCATCACAGTTTCTTAACCAAACACTCTTTTCAATTTTATGGCTTTCAATCAAAGCATTCATATTCTTCTTCTTCATCCAAGATAAGCATGAGTCTCAAGGCTGGCATTGTTGGCCTCCCTAATGTTGGCAAGTCTACCCTTTTCAATGCCGTTGTTGAAAACGGAAAGGCTCAAGCTGCTAATTTTCCTTTTTGTACGATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATTCTCGTCTCCATGTACTCTCCGATCTCAGTAAATCTCAACGAGTGGTTCCAGCATCCATAGAGTTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGCGAGGGGCTCGGTAATAAGTTTTTATCACATATTCGTGAGGTGGACTCCATACTTCAGGTTGTAAGATGTTTCGACGACAATGACATTATTCATGTGAACGGGAAAGTTGATCCCAAGTCCGATATCGATGTTATCAACTTGGAGCTTGTTTTCTCAGACTTAGACCAGATTGAGAAAAGACTGGATAAATTAAAAAAAAGCAAGACAAAGGATTCACAAACTAAAGTCAAGGAAGAGGCAGAAAAGTCTGCATTGGAAAAAATTCGTATCGCACTCTTGGATGGAAAACCTGCACGATCTGTGAGCTTAACAGATTTTGAAAGGGAGTCTATAAAGCAACTTTGCTTGCTCACCATGAAACCCATTATATATGTGGCTAATGTTGCGGAATCTGATCTAGCTGATGCTGCAAACAATGATTACGTCGTAGGCGTCAAGAATGTTGCATCTGAGTTGCAGTCGGGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAGCTTTCTGAACTAGCAACCGAAGAAAGGCAAGAATATTTGAAATCTCTTGGTGTTGATGAAGGTGGTCTTGGGAATCTCATTAGAGCAACCTATGATCTTTTGGGGCTGCGAACTTATTTCACTTCTGGTGAGAAGGAGACAAAAGCTTGGACAATACACGCAGGAATGACTGCGCCTCAAGCTGCTGGAGTTATTCACTCTGATTTTGAGAAGGGTTTCATTCGAGCAGAGACAGTGGCTTATAATGACTTTGTTGCTGCTGGTTCACTTGGTGCAGCACGAGAAAAAGGACTTTTGAGATCTGAAGGTAAAGACTACATTGTACAAGAAGGAGATGTAATGTTGTTTCGATTCAATGTATAG 1257 0.4097 MAKLVPTLVHPLKSKFFSNHHSFLTKHSFQFYGFQSKHSYSSSSSKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFDDNDIIHVNGKVDPKSDIDVINLELVFSDLDQIEKRLDKLKKSKTKDSQTKVKEEAEKSALEKIRIALLDGKPARSVSLTDFERESIKQLCLLTMKPIIYVANVAESDLADAANNDYVVGVKNVASELQSGIVTISAQVEAELSELATEERQEYLKSLGVDEGGLGNLIRATYDLLGLRTYFTSGEKETKAWTIHAGMTAPQAAGVIHSDFEKGFIRAETVAYNDFVAAGSLGAAREKGLLRSEGKDYIVQEGDVMLFRFNV 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01731 418 FunFam Ribosome-binding ATPase YchF 162 252 - -
Trre15g01731 418 CDD TGS_YchF_OLA1 332 416 IPR013029 -
Trre15g01731 418 SUPERFAMILY TGS-like 334 415 IPR012676 -
Trre15g01731 418 Pfam 50S ribosome-binding GTPase 53 165 IPR006073 GO:0005525
Trre15g01731 418 Gene3D - 97 417 IPR012675 -
Trre15g01731 418 CDD YchF 53 332 IPR041706 -
Trre15g01731 418 PANTHER OBG GTPASE FAMILY 41 417 - -
Trre15g01731 418 Coils Coil 179 206 - -
Trre15g01731 418 PIRSF EngD 48 418 IPR004396 GO:0005524|GO:0005525|GO:0016887
Trre15g01731 418 FunFam Ribosome-binding ATPase YchF 323 417 - -
Trre15g01731 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 356 IPR027417 -
Trre15g01731 418 NCBIfam redox-regulated ATPase YchF 49 418 IPR004396 GO:0005524|GO:0005525|GO:0016887
Trre15g01731 418 Hamap Ribosome-binding ATPase YchF [ychF]. 50 418 IPR004396 GO:0005524|GO:0005525|GO:0016887
Trre15g01731 418 Pfam Protein of unknown function (DUF933) 334 417 IPR013029 -
Trre15g01731 418 PRINTS GTP1/OBG GTP-binding protein family signature 136 154 IPR006073 GO:0005525
Trre15g01731 418 PRINTS GTP1/OBG GTP-binding protein family signature 53 73 IPR006073 GO:0005525
Trre15g01731 418 PRINTS GTP1/OBG GTP-binding protein family signature 75 93 IPR006073 GO:0005525
Trre15g01731 418 PRINTS GTP1/OBG GTP-binding protein family signature 119 134 IPR006073 GO:0005525
Trre15g01731 418 Gene3D - 162 252 IPR023192 -
Trre15g01731 418 Gene3D - 51 333 IPR027417 -
Trre15g01731 418 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 51 333 IPR031167 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01731 Trre-Chr15 13850884 13859309 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01731 15 13850884 13859309 Trre15g01731 15 13850884 13859309 ECH