Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01720 ATGGCTTCTTCAACTGAGTCACCGTTCAAATCAAACATATTGAAAGGGAAAGTAGCTTTGATTACAGGTGGAGCATCGGGAATTGGATTTGAAATATCAACACAATTCGGCAAACATGGTGCTTCCGTTGCTCTCATGGGTCGTCGTAAACAAGTTCTTCAATCTGCTGTTTCTGTTCTTCAATCACTTTCAATCCCAGCCGTTGCTTTTGAAGGTGATGTTAGGAAACAACAAGATGCTGCTAGAGTTATTGAATCTACTTTCAAACATTTTGGAAAGATTGATATTCTTGTTAATGCTGCTGCTGGTAACTTTCTTGCTGCTGCTGAAGATCTCTCCCCAAACGGATTTCGAACCGTTTTGGATATCGATTCTGTTGGCACATTCACTATGTGCCATGAAGCACTTAAATATCTCAAGAAAGGAGGACCAGGAAAGAGCTCTTTTAGCGGGGGAGCAATAATAAACATTAGTGCTACCTTGCATTATACAGCTAATTGGTACCAAATTCATGTATCTGCAGCAAAGGCAGCTGTTGATGCTACTACAAGAAACTTGGCACTGGAATGGGGAACAGATTATGATATTAGAGTCAATGGGATTGCACCAGGTCCAATAAGCGGCACACCTGGCCTGAGTAAACTGCTTCCTGATGAAATTGGTAGCGAAGCCACAAATGAAATGCCTCTATTTAAACTTGGAGAGAAATGGGATATTGCAATGGCTGCTCTCTACTTAGTATCAGATGCAGGAAAATTCATTAATGGTGACACTATGATAGTTGACGGAGGATTTTGGCTGAGCCAGCCTCGTTATTTACCAAAAGAGGCAGTGAGGCAAGTATCGCGAGCAATAGAAAAAAGATCCAGAGATGAACCAGTTGGTGTTCCAAAAAGCAAGCTATGA 906 0.415 MASSTESPFKSNILKGKVALITGGASGIGFEISTQFGKHGASVALMGRRKQVLQSAVSVLQSLSIPAVAFEGDVRKQQDAARVIESTFKHFGKIDILVNAAAGNFLAAAEDLSPNGFRTVLDIDSVGTFTMCHEALKYLKKGGPGKSSFSGGAIINISATLHYTANWYQIHVSAAKAAVDATTRNLALEWGTDYDIRVNGIAPGPISGTPGLSKLLPDEIGSEATNEMPLFKLGEKWDIAMAALYLVSDAGKFINGDTMIVDGGFWLSQPRYLPKEAVRQVSRAIEKRSRDEPVGVPKSKL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01720 301 CDD TER_DECR_SDR_a 14 267 - -
Trre15g01720 301 Gene3D - 1 291 - -
Trre15g01720 301 Pfam Enoyl-(Acyl carrier protein) reductase 23 265 - -
Trre15g01720 301 PANTHER PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE 3 289 IPR045017 GO:0008670|GO:0009062
Trre15g01720 301 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 267 IPR036291 -
Trre15g01720 301 FunFam Short-chain dehydrogenase reductase 6 270 - -
Trre15g01720 301 PRINTS Glucose/ribitol dehydrogenase family signature 146 162 IPR002347 -
Trre15g01720 301 PRINTS Glucose/ribitol dehydrogenase family signature 229 249 IPR002347 -
Trre15g01720 301 PRINTS Glucose/ribitol dehydrogenase family signature 92 103 IPR002347 -
Trre15g01720 301 PRINTS Glucose/ribitol dehydrogenase family signature 172 191 IPR002347 -
Trre15g01720 301 PRINTS Glucose/ribitol dehydrogenase family signature 194 211 IPR002347 -
Trre15g01720 301 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Trre15g01720 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 IPR002347 -
Trre15g01720 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 172 191 IPR002347 -
Trre15g01720 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 160 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01720 Trre-Chr15 13754757 13759968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01720 6 301 Acyl Lipid Metabolism Gene Families AT3G12800 76.094 3.83e-161 449