Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01680 ATGCATGTTTATGTGCCAACATCATTACTGGACCTAAATTGGTTTCTTGAGTTGTTTGGTTCTTCAGCCAAGAAAGTACACATTTCTGATCATAGTACAAAAATTGATGAACCTTTGTCCCAAGCAAGGTGCATATTGTTGGCAATTGTGATTGGTGTTGTGTTGTTGTACTTGTACCGGTCCAGAGAAAGCAAAGAACGTAATTTCAATTATACCAATAAGGTTGACGAAGAGGAGCCGGAGGAGGAACTTGTCGATGAATCAGACTGTTGTTTTGATTGGGATCAGCAGTTTCGTCATTCGAACACCGAGCACGGTGGTGCGTTAAGAAGCCATGTTCCGTGTGCTTTCTGTGGTGATCAAAGCACCACTAGGTGCGCTCGCTGCAAGGTTGCAAGATATTGCTCGGCGGAATGCCAAATTAAGCATTGGAGGTCGTGGCACAGACATGAATGCTTTAGAAGAGAGACGGAAGAAGGTGAAGCAAGAGATGTTCATGATCACCAAAACCCCATGCTTGTCGAGAATTATGATAATAAGAGTATCTCAAATGGGTCACATGGTAATGAAGTGGAATTGATGAGTTCAAATGTGGGAATAATGGATGGATCAAGTAGTAGTGATGTGAACAACTCTCATGTTGGTTGTGAACAATGTGGTAGCCCAAGTACCACCAGATGTTCACGATGCAAAGCCGTCAGATACTGTTCTACAATGTGTTTGATTATGAACTGGAAATGGCATAAATATAATTGCATTCCCGGGGATGCGAGTTCTTCTCCAACAGAAAGACCTAATAGAAATGAAGAGGAAGAAAATATTCATTCATCTACTCCCCTCTATTTGGAGCTTCATCCAGAAGGAACATCAAACTTCAAGTCTCCAACTAAAGTATCACAGATTACTACCACCGAGGAAAACGATAAAACTCGATGGGTGAAACACCTTGAAGATGAACTAGTAAAGTCTAGGAAAGAGATTTTTGCAATACAATCAGAGCGTGATGAGTGGAAGAAGGCAGCAAATATTGCTAGAGAAAGGTTTCAAAGCTTCAAAGAAGAATCTGAAAAACATTTGTCTGCGTTGAGAAATGAAAATGAATCAATATCGAATGCAGAGAAGAAAGCTTGCGATGTAATTCGTAGTTTACAGTTGCAGATTGCAGCACAAGAAAACATTGCAGAGAAAAGAAGACTAGAAGAACATATACAAATGCTAGAGATTGAATGTGCTAAGCTGAAGAAAGAACTACAAGAAGAGCACAAACATGCTCAATATCTTACACTAGAGTTTAACAAGAACCATGAGACTACACTTATTGCCATAAGAGAAGTTGAAGCGGTAAAACAAGAGCTCCTAGAAGAGCGCGAACATGTCCAACGAGTTAAAGATAATTTTATTAGGGACGTTGCAATCGCTGAATCAAGAGCTATTTTTGCTGAGGCAAAATTCAGTGATCTTCAGAGGAAAATCAAACTGACAGATTATAAGGTTCTTGTCAAGACAGACAGTTTGGGCAAACCTTCTATTGCATGCACTATATGTCTCACCAATGAAAAGGACATGGCCTTTGGGTGTGGACACATGACTTGCAGAGACTGCGGATCACAATTATCAAAGTGTCCAATATGCCGCGAGCCGATCACTAGTCAAATTAAGTTGTTTCCTGGGTGA 1674 0.4044 MHVYVPTSLLDLNWFLELFGSSAKKVHISDHSTKIDEPLSQARCILLAIVIGVVLLYLYRSRESKERNFNYTNKVDEEEPEEELVDESDCCFDWDQQFRHSNTEHGGALRSHVPCAFCGDQSTTRCARCKVARYCSAECQIKHWRSWHRHECFRRETEEGEARDVHDHQNPMLVENYDNKSISNGSHGNEVELMSSNVGIMDGSSSSDVNNSHVGCEQCGSPSTTRCSRCKAVRYCSTMCLIMNWKWHKYNCIPGDASSSPTERPNRNEEEENIHSSTPLYLELHPEGTSNFKSPTKVSQITTTEENDKTRWVKHLEDELVKSRKEIFAIQSERDEWKKAANIARERFQSFKEESEKHLSALRNENESISNAEKKACDVIRSLQLQIAAQENIAEKRRLEEHIQMLEIECAKLKKELQEEHKHAQYLTLEFNKNHETTLIAIREVEAVKQELLEEREHVQRVKDNFIRDVAIAESRAIFAEAKFSDLQRKIKLTDYKVLVKTDSLGKPSIACTICLTNEKDMAFGCGHMTCRDCGSQLSKCPICREPITSQIKLFPG 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01680 557 Coils Coil 313 372 - -
Trre15g01680 557 Pfam Zinc finger, C3HC4 type (RING finger) 511 550 - -
Trre15g01680 557 SUPERFAMILY HIT/MYND zinc finger-like 212 253 - -
Trre15g01680 557 Coils Coil 389 423 - -
Trre15g01680 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 503 556 IPR013083 -
Trre15g01680 557 ProSiteProfiles Zinc finger RING-type profile. 512 545 IPR001841 -
Trre15g01680 557 Gene3D - 200 255 - -
Trre15g01680 557 Gene3D - 99 158 - -
Trre15g01680 557 Coils Coil 442 465 - -
Trre15g01680 557 PANTHER CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING 290 555 - -
Trre15g01680 557 Pfam MYND finger 115 152 IPR002893 -
Trre15g01680 557 Pfam MYND finger 216 252 IPR002893 -
Trre15g01680 557 ProSiteProfiles Zinc finger MYND-type profile. 115 152 IPR002893 -
Trre15g01680 557 SUPERFAMILY HIT/MYND zinc finger-like 112 154 - -
Trre15g01680 557 SMART ring_2 512 544 IPR001841 -
Trre15g01680 557 MobiDBLite consensus disorder prediction 257 277 - -
Trre15g01680 557 SUPERFAMILY RING/U-box 496 552 - -
Trre15g01680 557 ProSiteProfiles Zinc finger MYND-type profile. 216 252 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01680 Trre-Chr15 13491189 13499366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01680 115 152 Miscellaneous Gene Families AT4G31670 55.263 1.30e-07 52.8