Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01678 ATGGGAAACTCGCAGACAAAAAAGGGTGACACTCAATTTTCAGGAAACGTTGATGATTCACCAAGAATCACATCCACCATAAACAGATCTCAACAACATTTTTCTTCAACAAGTTCAGGGAAGCTCTCTACTAAGAAGAAATATGCTCTAATTCCTGATAACTTCACTACTCTTCAACAGGTTACAAGTGCCTTGAGGAATGAAGGTTTAGAATCCTCAAATCTTATCCTTGGAATCGATTTTACGAAAAGTAATGAATGGACTGGAAGAAACTCATTCAATAATAGAAGCCTGCATGCTATTGGAGATACACCTAACCCTTATGAGAAAGCCATTTCAATTATTGGCAAGACTTTGGCTCCTTTTGATGATGACAACTTGATTCCTTGTTTTGGCTTTGGTGATGCTACGACTCATGATCACGAAGTGTTTAACTTTCATGCTGATAACTCATCTTGCCATGGATTTGAGGAAGTTTTGGCTTGCTATCAAAAAGTCGTTCCAAACTTGAGTCTTTCGGGACCAACTTCATATGCTCCGGTGATTGAGGCTGCAATAGACATAGTTGAGAAAACTCATGGTCAATTCCATGTTTTAGTTATTGTTGCAGATGGCCAGGTTACAACAAATGGAAACAACGAAGATGGAAAACTAAGTCCTCAAGAAGAGAGGACAATAAAAGCAATCGCTGATGCAAGTTCATATCCTCTTTCTATTGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGATATGAAAAAGTTTGATGACAAATTACCTGCACGTGATTTTGACAATTTTCAGTTTGTTAACTTAACAGACATTATGTCTAAAAAAATTAGCACGTCTGCGAAAGAAGCTGCTTTTGCTCTGGCCGCACTTATGGAGATACCTTTCCAATATAAAGCAGCCCTTGAGCTAGGATTACTTGGTCGTGCAACAGGAAGGGCAAAGAAAATGGTTCCAAGACCACCTCCGGCTCCTTATTCTCGACCAATGCCACCAGAACATTTTCTGAGGAACATGTCAACATCATCAATCGATGACGAGCAAAATCAAATGGTATGCGCTATATGTCTCACCAATAGAAAGGATTTGGCCTTTGGATGTGGTCATATGACCTGCAGAGATTGTGGTTCTAGATTAAGCAATTGTCATATATGCCGCCAGAGGATCACCAATCGTTTAAGGGTGTATACTGGATGA 1206 0.3988 MGNSQTKKGDTQFSGNVDDSPRITSTINRSQQHFSSTSSGKLSTKKKYALIPDNFTTLQQVTSALRNEGLESSNLILGIDFTKSNEWTGRNSFNNRSLHAIGDTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDHEVFNFHADNSSCHGFEEVLACYQKVVPNLSLSGPTSYAPVIEAAIDIVEKTHGQFHVLVIVADGQVTTNGNNEDGKLSPQEERTIKAIADASSYPLSIVLVGVGDGPWEDMKKFDDKLPARDFDNFQFVNLTDIMSKKISTSAKEAAFALAALMEIPFQYKAALELGLLGRATGRAKKMVPRPPPAPYSRPMPPEHFLRNMSTSSIDDEQNQMVCAICLTNRKDLAFGCGHMTCRDCGSRLSNCHICRQRITNRLRVYTG 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01678 401 Pfam Zinc finger, C3HC4 type (RING finger) 353 393 - -
Trre15g01678 401 SUPERFAMILY vWA-like 73 256 IPR036465 -
Trre15g01678 401 SUPERFAMILY RING/U-box 350 396 - -
Trre15g01678 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 400 IPR013083 -
Trre15g01678 401 SMART VWA_4 72 277 IPR002035 -
Trre15g01678 401 Pfam Copine 97 310 IPR010734 -
Trre15g01678 401 PANTHER COPINE FAMILY PROTEIN 1 22 375 - -
Trre15g01678 401 ProSiteProfiles Zinc finger RING-type profile. 356 389 IPR001841 -
Trre15g01678 401 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01678 Trre-Chr15 13481168 13487799 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01678 15 13481168 13487799 Trre15g01678 15 13481168 13487799 ECH