Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01668 ATGGGAGTGGTGATAATAGACGGCACAACCGTGAGAGACTTCATCAACGACGACGCGAGTTTCACAAATAGCGTCAACGAACAATTTCAATCTCTCGATCTCAACAACGACGGCGTTTTAACACGCGCAGAACTCCGAACAGCTTTCGAATCCATGAGATTAATCGAAGCACACTTCGGCATCGACGTAACAACTCCGCCGGAGCAACTCACCCGTCTCTATGACTCCGTTTTTGATACTTTTGACGTAGACGGAAGCGGCACCGTTGATCGTGAGGAGTTTAAATCTGAGATGAAGAAGATTATGCTTGCTATTGCTGATGGATTGGGATCTTCTCCTATTCAAATGGTTCTTGAAGATGATTCTCAGAGTCTTCTTCAGAAAGCTGCTGATCTTGAAGCTTCTAAATACTTGGATGCATATCTTCCATTAAAGATGGGGATAACAATATGGCGAATGTTTCAAAATAAAATTCCATTGAAGGACGATTTACTTAAGAGAGGAGTTTTGATCAAATTACAAACAAATTGTGCTTATGGATGCAGAGTAACAGAGATAGCATCACATATTTTCTTTGAATGTAGCTAA 588 0.4116 MGVVIIDGTTVRDFINDDASFTNSVNEQFQSLDLNNDGVLTRAELRTAFESMRLIEAHFGIDVTTPPEQLTRLYDSVFDTFDVDGSGTVDREEFKSEMKKIMLAIADGLGSSPIQMVLEDDSQSLLQKAADLEASKYLDAYLPLKMGITIWRMFQNKIPLKDDLLKRGVLIKLQTNCAYGCRVTEIASHIFFECS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01668 195 CDD EFh 29 99 IPR002048 GO:0005509
Trre15g01668 195 SUPERFAMILY EF-hand 25 103 IPR011992 -
Trre15g01668 195 ProSiteProfiles EF-hand calcium-binding domain profile. 20 55 IPR002048 GO:0005509
Trre15g01668 195 Pfam zinc-binding in reverse transcriptase 127 195 IPR026960 -
Trre15g01668 195 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Trre15g01668 195 Gene3D - 21 55 - -
Trre15g01668 195 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 161 - -
Trre15g01668 195 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Trre15g01668 195 ProSitePatterns EF-hand calcium-binding domain. 33 45 IPR018247 -
Trre15g01668 195 SMART efh_1 24 52 IPR002048 GO:0005509
Trre15g01668 195 SMART efh_1 73 101 IPR002048 GO:0005509
Trre15g01668 195 Gene3D - 56 139 - -
Trre15g01668 195 Pfam EF-hand domain pair 26 98 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01668 Trre-Chr15 13382481 13383781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01668 1 136 EF-hand Containing Proteins AT2G44310 68.382 5.98e-66 197