Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01660 ATGTCATTTTTATGCGTCAAGAATTTTTTCAAGAGGCTTTGGGTTGATGAATTCCAAATTGATCTCTTGCCATCTCTTGGAGCAAGAATCAACCAAGAAACTGAACTCAAAAGATACATAATCTCCCCCTTCAATCCAAAGTATAGGATTTGGGAGACGTGGTTGATAGTTCTTGTGATTTACTCTGCATGGATATACCCATTTCAATTTGCATTTCTACCTTATAAGATTAACACACTATTCATCATAGATAACATTGTGAATGGTTTCTTTGCCATTGACATATTGATGACATTCTTTGTTGCATATCTTGATAACCATTCTTACCAACTTGTTGATGATCGTAAGAAAATTGCAATCAGGTACTTATCTACCTGGTTTATCTTTGATGTTTGTTCAACTGCACCTTTTCAATCTATTAGCTCCTTATTCACCAATAGTAGCAATGATATTGGATACAAAGCTCTTAACATGCTTCGGTTATGGCGTCTCTGGCGAGTCAGTTCTCTGTTTGCAAGACTTGAGAAAAACATTCACTTCAATTACTTTTGGACTAGGTGCTCGAAGCTCGTTGCTGTGACCTTGTTTGCAGTACACTGTGCTGGATGCGTTAACTATTTAATTGCAGATAGTTACCCTGATTCCAAAAGGACATGGATTGGTTCTGTGTACCCAAATTTTAAAGAAATGAGTCTTTGGGATAGATATGTGACATCAATGTATTGGTCAATTGTGACACTAACTACAACTGGATATGGAGATTTGCATGCTAATAACACTAGAGAGATGCTGTTTGACATTTTCTATATGTTGTTCAACTTGGGATTAACAGCTTATATCATTGGAAACATGACAAATCTTGTTGTTCAATGGACAAGTCACACCAGAAATTTTAGAGATACAGTCAGAGCAGCTTCAGAATTTGCAAAAAGAAATCATCTTCCTCATGATAAACAAGATCAAATATTATCATATTTATGTTTAAGGTTCAAAACAGAAGGATTAAAACAGCAAGAAACAATAAATTGCATGCCGAAAGCAATTCGCGCAAACATTACACACCATTTGTTTTTTCCTATTGTTCAGAATTCATACCTCTTCCAAAGAGTTTCACCTGACTTTCTTTTTCAACTGGTTACAGAAATGGAAGCTGAATATTTTCCACCAAAAGAAGATGTTATGTTACAAAATGAGTCTCCAACAGATCTTTACATGTTGGTTTCAGGAGCAGTGGAACTCATTCACAATGTCGATGGTCGGGATCAAGTTTTGCAGACGGAAGTAGGTGCAGGAGATACAATTGGAGAGATTGGAGTCTTATACAATAGACCACAACCTTTCACTGTTAGGACCAAAAACCTTTCACAAATTTTAAGACTTAGCAGAACTTCATTGATGAATGCCCTTCATGCAAATCCAGAAGCAGCACCAATTATAATGACAAATCTTTTTATGAGGTTAAATGGACAAGAAGGATTGAGTTTTGAATATCCACCTAAAGACACTAAATTGGCTCTTCATGGCATGCATGTTGTGAGCAACACAATTGGAAATTCATGTCTTGAATGTACAAAAAATTCACATAGATTATTATATGATATGATGCCTAACAAGGATGAAAACCAGCCAGAACAAGAAGAAAATGAAAAGAACCTAAGTCCTGTTAGATGGAAACAGAAAGAAATAGAAGAAAAGCAACAAAACAAGAGTTATGAAAATGGAAAGAAATTAGATGAACATATAATAGAGTTTATGGAGACAGATGTTAGGAGTGGCCAAATTTCATTAGGAAGAAGTAATAATCATCCAATTGAGAGAAAAAAAGAATTTTTTGTCAATAAGAGAGTTACCATTCACTATCTAGGCCAAGGTCAACATGGAAAGTTGATAATTCTACCTGATTCATTGGAAGAGCTTCTCAAGATTGTTGGAGAAAAGTTTGGAGGGCCAAAACCTAACAAAATAACGAACGCAGATAATGCAGAGATAGATGACTTGTTTGTCATTCGAGATGGTGACCATCTGTTTTTCCATTGCAGCGACAATGAATTTTTGAGCTAA 2061 0.3552 MSFLCVKNFFKRLWVDEFQIDLLPSLGARINQETELKRYIISPFNPKYRIWETWLIVLVIYSAWIYPFQFAFLPYKINTLFIIDNIVNGFFAIDILMTFFVAYLDNHSYQLVDDRKKIAIRYLSTWFIFDVCSTAPFQSISSLFTNSSNDIGYKALNMLRLWRLWRVSSLFARLEKNIHFNYFWTRCSKLVAVTLFAVHCAGCVNYLIADSYPDSKRTWIGSVYPNFKEMSLWDRYVTSMYWSIVTLTTTGYGDLHANNTREMLFDIFYMLFNLGLTAYIIGNMTNLVVQWTSHTRNFRDTVRAASEFAKRNHLPHDKQDQILSYLCLRFKTEGLKQQETINCMPKAIRANITHHLFFPIVQNSYLFQRVSPDFLFQLVTEMEAEYFPPKEDVMLQNESPTDLYMLVSGAVELIHNVDGRDQVLQTEVGAGDTIGEIGVLYNRPQPFTVRTKNLSQILRLSRTSLMNALHANPEAAPIIMTNLFMRLNGQEGLSFEYPPKDTKLALHGMHVVSNTIGNSCLECTKNSHRLLYDMMPNKDENQPEQEENEKNLSPVRWKQKEIEEKQQNKSYENGKKLDEHIIEFMETDVRSGQISLGRSNNHPIERKKEFFVNKRVTIHYLGQGQHGKLIILPDSLEELLKIVGEKFGGPKPNKITNADNAEIDDLFVIRDGDHLFFHCSDNEFLS 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01660 686 Gene3D - 49 289 - -
Trre15g01660 686 FunFam Potassium channel KAT2 354 491 - -
Trre15g01660 686 CDD CAP_ED 366 476 IPR000595 -
Trre15g01660 686 PANTHER POTASSIUM CHANNEL AKT1 20 542 IPR045319 GO:0005249|GO:0006813
Trre15g01660 686 MobiDBLite consensus disorder prediction 537 572 - -
Trre15g01660 686 PRINTS EAG/ELK/ERG potassium channel family signature 262 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre15g01660 686 PRINTS EAG/ELK/ERG potassium channel family signature 84 94 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre15g01660 686 PRINTS EAG/ELK/ERG potassium channel family signature 236 253 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre15g01660 686 PRINTS EAG/ELK/ERG potassium channel family signature 95 104 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre15g01660 686 PRINTS EAG/ELK/ERG potassium channel family signature 61 68 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre15g01660 686 PRINTS EAG/ELK/ERG potassium channel family signature 280 289 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre15g01660 686 Pfam Cyclic nucleotide-binding domain 386 470 IPR000595 -
Trre15g01660 686 ProSiteProfiles cAMP/cGMP binding motif profile. 366 486 IPR000595 -
Trre15g01660 686 FunFam Potassium channel KAT3 50 290 - -
Trre15g01660 686 ProSiteProfiles KHA domain profile. 615 686 IPR021789 -
Trre15g01660 686 SUPERFAMILY cAMP-binding domain-like 293 487 IPR018490 -
Trre15g01660 686 Pfam Ion transport protein 49 295 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre15g01660 686 Gene3D Helix hairpin bin 290 356 - -
Trre15g01660 686 SMART cnmp_10 366 484 IPR000595 -
Trre15g01660 686 SUPERFAMILY Voltage-gated potassium channels 43 289 - -
Trre15g01660 686 Gene3D Jelly Rolls 359 488 IPR014710 -
Trre15g01660 686 Pfam KHA, dimerisation domain of potassium ion channel 614 677 IPR021789 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01660 Trre-Chr15 13334887 13341798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01660 1 677 Ion Channels AT5G46240 59.712 0.0 822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01660 15 13334887 13341798 Trre15g01660 15 13334887 13341798 ECH