Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01624 ATGGCTCTCTCTTCTCCTCAACTTTCCCTAACTCCATTTTCTCGTTTAACCCAATTCAACACTTGTTCTTCTTACACTTTCATCACCAACAACACTTCTCAAACCGTTACTTCATGCCAAATTATCCGCATACCCAACAAAAACAACTTCTCTCTTTCTCTCACAAAACAACAACCAACTTCATCATCCTTCTTAATAACCGCTTCTTCTACTAAAACTCATCCCATGCTCCCTCCTTACAATGTTTTGATTACTGGCTCAACCAAAGGGATAGGGTATGCTTTAGCAAAAGAGTTTTTGAAAGCAGGGGACAATGTCTTGATTTGCTCTAGATCAGATGAAAGGGTAGAGACTGCTGTCAAGGGCTTGAGAGAAGAATTTGGGGAGCAACATGTGTGGGGCACTACATGTGATGTCAAAAACGGAGAGGATGTGAAAAATTTGGTTTTGTTTGCTAAAGAAAAACTTAAATACATTGACATATGGATCAATAATGCTGGATCGAATGCATATAGCTACAAGCCACTTGCTGAAGCATCAGATGAGGATCTTATTGAGGTGGTTACAACAAACACACTTGGCTTGATGATATGCTGTCGAGAGGCAATAAAGCTGATGGTGAACCAACCTCGCGGAGGTCATATTTTCAATATTGATGGAGCAGGTTCAGATGGAAGACCAACTCCCAGGTTTGCTGCATATGGAGCAACAAAGAGAAGTGTGGTGCATTTAACAAAATCTTTACAGGCAGAATTGCAGATGCAAGATGTTAAAAATGTCATGGTTCACAATCTTTCGCCAGGAATGGTTACAACGGATCTTCTCATGTCTGGCGCCAATACAAAACAGGCGAAGTTTTTCATTAATGTCTTGGCTGAACCAGCTGAAGTGGTTGCCGAATATTTAGTTCCAAACATTAGATCTATCCCTACCAACAGATCGATGAAGCCAACATACATCCGATTCCTTACGGGATTGAAAGCCTATTCCCAAATATTTTCAAGATTTGCATTTGGGGCAAGGAGGAACCGGTACATCATTGAAGATTGA 1050 0.4076 MALSSPQLSLTPFSRLTQFNTCSSYTFITNNTSQTVTSCQIIRIPNKNNFSLSLTKQQPTSSSFLITASSTKTHPMLPPYNVLITGSTKGIGYALAKEFLKAGDNVLICSRSDERVETAVKGLREEFGEQHVWGTTCDVKNGEDVKNLVLFAKEKLKYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIKLMVNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVMVHNLSPGMVTTDLLMSGANTKQAKFFINVLAEPAEVVAEYLVPNIRSIPTNRSMKPTYIRFLTGLKAYSQIFSRFAFGARRNRYIIED 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01624 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 300 IPR036291 -
Trre15g01624 349 CDD SDR_c 82 303 - -
Trre15g01624 349 Gene3D - 70 320 - -
Trre15g01624 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 213 221 IPR002347 -
Trre15g01624 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 234 253 IPR002347 -
Trre15g01624 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 168 IPR002347 -
Trre15g01624 349 FunFam Chlorophyll(Ide) b reductase NOL, chloroplastic 77 322 - -
Trre15g01624 349 Pfam short chain dehydrogenase 82 277 IPR002347 -
Trre15g01624 349 PRINTS Glucose/ribitol dehydrogenase family signature 234 253 IPR002347 -
Trre15g01624 349 PRINTS Glucose/ribitol dehydrogenase family signature 258 275 IPR002347 -
Trre15g01624 349 PRINTS Glucose/ribitol dehydrogenase family signature 81 98 IPR002347 -
Trre15g01624 349 PRINTS Glucose/ribitol dehydrogenase family signature 157 168 IPR002347 -
Trre15g01624 349 PRINTS Glucose/ribitol dehydrogenase family signature 207 223 IPR002347 -
Trre15g01624 349 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 221 249 IPR020904 GO:0016491
Trre15g01624 349 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 65 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01624 Trre-Chr15 12997522 13003070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01624 41 274 Acyl Lipid Metabolism Gene Families AT1G24360 29.289 8.72e-18 81.3