Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01622 ATGTTCCAAGATCCTTCAATCAAGCTTTTTGGAAGTGATATTCAAATTCATATTCCCATTAACTCAACAGATTTACACTCTCAGATTCACTCTCTTCCACAACCCATCATTATCATGAATGGACTTGAAGAAGAATCAACTAATGCTGATGTTGGTGTTCCTTTGAATGAAGTTTCTAGCAAACAAGCTAAACCTCAAGAAGATGCTAATGCTTTTCCAAACATGTACGAAACTGGCACTTCGAAACCGGCGACCAAAGCAGTTCATAGAACTAATGAACACACGACTGCCAAAAGAGATAATGACAATCAAGAGAAAGCTTTCAAGAAGCCAGACAAGGTTCTTCCGTGTCCTCGGTGCAATAGTTTGGAGACAAAGTTTTGCTATTTCAACAATTATAATGTTAACCAACCAAGACATTTCTGCAAAAAATGTCAGAGGTATTGGACAGCAGGGGGAGCAATTAGGAATGTTCCTATCGGAGCCGGTAAGCGTAGAAATAAACATCCACCTTTGCAGAATTGTCAAGTTCCTGTTACCCTTGATGTTGTACCTGTCATACACACAGATTCCAACACTACTAGTCTCAATGAGGAAGTTCCTCTTAGTGAATCACTAGAAGTGTTAAATCTCAAGGACCATCGAAATATTGAAATCGACTTGCCCACTGTCAAAGAGGATATTGATGAACCTTCTCGCACTTCCACGAGAGCTGCCGAATCCGGCGAAATGGAGCATTCGGAAAATGGAATAGAGCATGTTGGTTTGACACCACAATACAATGGCTTAATTCCTTTGCATTCACTTCATTATTATTCTGCTCCTCCTTGGACTTGTCAATGGAATCCATGTTGGAATCCTACGGCATTTAAGCCGGATAACATAACTTCAAATCCTGCAACCATGATGGCAGTAGAAATACCAATGGCACCTTCATCATATTGGGGTTGTATGCCAAATTGGGTTGGCCAAATGGAAGAATTTAATGGCATTCCATCACCTTCATCTTCGGTTAGCAGCGGCACTTGTTCCGGCAATAGGTCACCAACTTTAGGAAAACATTGTAGAGATGGAAGTACACAAGAAGAAGATACAATGAAGCCGAATATTTGGGTGCCTAAAACTATCAGAATTAACGATCCAGAAGAGGCTGCTAAGAGTTCTATATGGTCAACTTTAGCAACAAAATCTAAACAGAACAAACCTGTTATGAAAGGAAGTGTTTTTAAATCATTTGAACCAAGGTCAAATGCAAATTCTCGTGATTTAGACGATAATCAAATCCTTAGAGCAAACCCTGCTGCTTTCTCTCGCTCGGGATCTTTCCAGGAAAGCATGTAA 1341 0.4012 MFQDPSIKLFGSDIQIHIPINSTDLHSQIHSLPQPIIIMNGLEEESTNADVGVPLNEVSSKQAKPQEDANAFPNMYETGTSKPATKAVHRTNEHTTAKRDNDNQEKAFKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKKCQRYWTAGGAIRNVPIGAGKRRNKHPPLQNCQVPVTLDVVPVIHTDSNTTSLNEEVPLSESLEVLNLKDHRNIEIDLPTVKEDIDEPSRTSTRAAESGEMEHSENGIEHVGLTPQYNGLIPLHSLHYYSAPPWTCQWNPCWNPTAFKPDNITSNPATMMAVEIPMAPSSYWGCMPNWVGQMEEFNGIPSPSSSVSSGTCSGNRSPTLGKHCRDGSTQEEDTMKPNIWVPKTIRINDPEEAAKSSIWSTLATKSKQNKPVMKGSVFKSFEPRSNANSRDLDDNQILRANPAAFSRSGSFQESM 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01622 446 PANTHER CYCLIC DOF FACTOR 2 3 445 IPR045174 GO:0003700|GO:0006355
Trre15g01622 446 MobiDBLite consensus disorder prediction 412 446 - -
Trre15g01622 446 ProSitePatterns Zinc finger Dof-type signature. 117 153 IPR003851 GO:0003677|GO:0006355
Trre15g01622 446 MobiDBLite consensus disorder prediction 396 446 - -
Trre15g01622 446 ProSiteProfiles Zinc finger Dof-type profile. 115 169 IPR003851 GO:0003677|GO:0006355
Trre15g01622 446 MobiDBLite consensus disorder prediction 87 107 - -
Trre15g01622 446 MobiDBLite consensus disorder prediction 332 355 - -
Trre15g01622 446 MobiDBLite consensus disorder prediction 228 248 - -
Trre15g01622 446 Pfam Dof domain, zinc finger 112 169 IPR003851 GO:0003677|GO:0006355
Trre15g01622 446 MobiDBLite consensus disorder prediction 76 107 - -
Trre15g01622 446 MobiDBLite consensus disorder prediction 332 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01622 Trre-Chr15 12986279 12988742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01622 80 445 C2C2-Dof Transcription Factor Family AT5G39660 37.659 1.38e-61 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre15g01622 zf-Dof 3.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01622 - - cam:101489693 635.18