Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01579 ATGCCAAGGAAGCTCATGGTGGATACAATTTTGGTTTCTGGGTTTATGATGGAAGAAGACAACACTGTTATTATTGACAAATCTAAGATTGTAGAAGTGAAACCCTTGCGTAGTTTAGCTCCTGTATTACCAAACAATGTTCAATCCTTTTTTTGTGGTCAATACCCATCTGGGTTTTCACCATTTTGTTCATTTGTCAAACCCCAACAAATTCCTGTTATAAATGAAACTGAAGAAGTTTCTATTAATTTCAATGCAACAGTAGATGATACTCCTGTTGCTCCGAAACCGACTCCGGAAACTCCTGTTGCTGCTAAGGTGACTCCAATTAGGTCATATAAGAGTTCACATGATGAAGAAGTGAATGTGAATCATCGAGCTGACGGAGATGGAGATGAAGATGATCATTTGTTTTCGGAAGGGTTGAATGGTGATGATTGGGGAGGTTGTAGTAGAAAGCGAGGTACACAGAATATAGAGAACTGCAAAGAGTTTCTTAAAAGGAAGAAGAATAAGAAAACTCGGGAGCCAACCATTGGTGTTGGTGGTTACCCGATTCTAAAAGAGGATGGTGATCGCGAAGCAGTTAATTATGTGCTCATGTCATATGATTCGCTTCGAAGAAGGATCTGTCAACTTGAAGAATCGAAGGAACTGGGCAATGCACTTGCCAAGCGTCCAGATCTTAGAGCAAGTAATGCTTTGACGAGTAGTGGGGTTAAAACAAACATGAGGAGAAGAGCAGGAGTGGTTCCTGGGATTGAGGTTGGGGACATTTTCTTTTTTCGGATGGAAATGTGTCTTGTGGGTTTACATGCTCAATCAATGGGTGGAATTGATTACATGAACTTCAAGGATGGGTCTAAGGAGGATTCTATGGCGATAAGTGTTGTTTCATCAGGAGTGTATGGTGATGAATCAAAGAATAACGATGTTTTATATTATAGTGGTTCGGGTGAGAATTTCAACAAGAAAGATAAACATGTGTCTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTGAACAGAAGTGCGGAACGGCACGATGAAGTTAGAGTCATTCGGGGTTTGAGAGATACTGTGAATAGAAGTGCAAAAATCTATATGTATGATGGTTTGTATAAAATCCAAGATTCTTGGATTGAAAAAGAGAAGTCTGGTGGTGGTGTTTTTAAGTATAGGATGGTAAGGTTGCCTGGTCAGAAAAGTGCTTATGCTTCTTGGATGTTGGCTCAAAAGTGGAAGGTGGATTCCTCTTCAAGGAATGGTTTTATTCTTGCTGACCTCTCCAATGGAGTTGAAAGTATTCCAGTATCACTTATCAATGATGTTGATAATGAAAAGGGTCCTGCTTTTTTCACTTATTTCATGTCTCTCAAAAATCCGAAACCTTTTGATTTAGCGCAGCCTTCATTTGGCTGTAATTGTAACAAAGCATGTATCCCTGGTGATTTGAACTGTTCATGCATTCAAAGAAACGAAGGCGATTTTCCTTATATTGCAAATAGTATTCTAGTGACTCGGAAGCCAATGATTCATGAATGTGGCCCTATGTGTCAGTGTTTTCCTAACTGCAAAAACCGAGTATCGCAGACTGGTTTAAAACAATACTTGGAGGTGTTCAAAACAAAGGGTAGAGGTTGGGGGCTTCGAACACTGGATCCTATACGTGCTGGTACCTTTATTTGTGAGTATGCCGGAGAAGTTATTGACAGAGATACGGCATATCAAAATGGGGAAGGAGATAATGATGAATATGTTTTCGATACAAGCCGTATTTATGTACCATTCACGTGGAATCATGATTCTAACTTATTGGAAGAAGTAAGTTCAAATGTTTCAAGCGAGGATTATACTATACCATCTCCTCTAATAATAAGTGCTAAGAATGTGGGAAATGTGGCTAGATTCATGAACCATAGTTGCTCCCCAAATGTGTTTTGGCAGCCAGTTCTATATGCAGAAAACAATCGATCCTTTCTCCACATTGCATTTTTTGCCCTTAGGCATATTCCTCCAATGGCAGAGTTGACATATGATTATGGAGCTGTCCCTACTGGTCGTGTTGCTCACAGAAAGACATCGTACTTGCAAGTCTATTCATGGCTAAATGAGATAGATGAGGAAGTTGATTGTCAAGAGTCAGATCCAGCTTAG 2157 0.3978 MPRKLMVDTILVSGFMMEEDNTVIIDKSKIVEVKPLRSLAPVLPNNVQSFFCGQYPSGFSPFCSFVKPQQIPVINETEEVSINFNATVDDTPVAPKPTPETPVAAKVTPIRSYKSSHDEEVNVNHRADGDGDEDDHLFSEGLNGDDWGGCSRKRGTQNIENCKEFLKRKKNKKTREPTIGVGGYPILKEDGDREAVNYVLMSYDSLRRRICQLEESKELGNALAKRPDLRASNALTSSGVKTNMRRRAGVVPGIEVGDIFFFRMEMCLVGLHAQSMGGIDYMNFKDGSKEDSMAISVVSSGVYGDESKNNDVLYYSGSGENFNKKDKHVSDQKLQRGNLALNRSAERHDEVRVIRGLRDTVNRSAKIYMYDGLYKIQDSWIEKEKSGGGVFKYRMVRLPGQKSAYASWMLAQKWKVDSSSRNGFILADLSNGVESIPVSLINDVDNEKGPAFFTYFMSLKNPKPFDLAQPSFGCNCNKACIPGDLNCSCIQRNEGDFPYIANSILVTRKPMIHECGPMCQCFPNCKNRVSQTGLKQYLEVFKTKGRGWGLRTLDPIRAGTFICEYAGEVIDRDTAYQNGEGDNDEYVFDTSRIYVPFTWNHDSNLLEEVSSNVSSEDYTIPSPLIISAKNVGNVARFMNHSCSPNVFWQPVLYAENNRSFLHIAFFALRHIPPMAELTYDYGAVPTGRVAHRKTSYLQVYSWLNEIDEEVDCQESDPA 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01579 718 Pfam SET domain 547 682 IPR001214 GO:0005515
Trre15g01579 718 SMART set_7 536 688 IPR001214 GO:0005515
Trre15g01579 718 Pfam SAD/SRA domain 248 401 IPR003105 -
Trre15g01579 718 ProSiteProfiles SET domain profile. 536 682 IPR001214 GO:0005515
Trre15g01579 718 Pfam Pre-SET motif 430 528 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre15g01579 718 Gene3D SET domain 407 686 IPR046341 -
Trre15g01579 718 SMART preset_2 426 520 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre15g01579 718 SMART G9a_1 244 401 IPR003105 -
Trre15g01579 718 ProSiteProfiles Pre-SET domain profile. 472 533 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre15g01579 718 SUPERFAMILY SET domain 412 683 IPR046341 -
Trre15g01579 718 Gene3D - 248 406 IPR036987 -
Trre15g01579 718 SUPERFAMILY PUA domain-like 231 419 IPR015947 -
Trre15g01579 718 ProSiteProfiles YDG domain profile. 249 397 IPR003105 -
Trre15g01579 718 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 31 718 IPR025794 GO:0016571
Trre15g01579 718 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 68 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01579 Trre-Chr15 12670369 12675139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01579 26 686 Su(var)3-9 homologs AT1G73100 47.807 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre15g01579 SAD_SRA 3e-45 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01579 15 12670369 12675139 Trre15g01579 15 12670369 12675139 ECH
Trre5g00208 5 1264364 1266349 Trre15g01579 15 12670369 12675139 PCT