LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g01533	ATGTCTCCATCAATGAAATCAAAATCCAAGTCCAAGGAGAAGGCTTCTGCAAAGGCTATTAAGGAACAACAGAAGACTTCTCCAAAGAATTCTGGATCTACTAATGATGAGAGTGGCATTCCTGCTAGTGTGTGTGATCCTATCACGGAAACAGTTCAAACTCTAGAAACATCATTGGCCGATTCTTTCGCAAAAATAAACGATACAGATGATCATTCTAGCAGTCCTCAGGGAACGGTGTCTGAGTATGATTCAGTTTCTAATAACGGAAGCTGTTCTGGTGAATCAGAAGACACTAAAGAGAAAGCTGCAAGCTCCTCTACGCGGTTGGATATTATACCTGGTTGTGATACTGACAGAAGGGATAAGATCCGACTGAAAAATGAGAGGAAGCATCAAAGGCAGAGGGAAAGGAGAGCTCATGAATTGCACGAGCGATGTGGTATGTTTCTTGTGTCGAGGAAGCTAGAAAAACTTACAGAGAAGTTAGTGGCGATGGGATTCTCTTCTGAGCAAGCAACATTAGCTTTGAAGTTAAATGAAGGCAAATTAGAAGAATCAATATCTTGGTTGATTGATGGAAGTGAAGCGAAAGATACTACCAAGCTTACAAGTGAAAGTAATTTGAAAATTGACATAAGTGAAGAGCTTCAACAGATTTACGCCATGGAAGTGAAGTACAATTGTTCAAAGCAAGAAGTTGAAAGAGTAGTTGTTGCCTGTGAAGGTGATCTTCAAAAGGCAGATGACACATTAAAATCTCAGAAGCAAGAATCTCCTATGAATCAGTCAGAAGATTCTGCTCAAAATAATAGTTTGACGAGATCTCATGAATTACAACCAGCTTCAGTTTCAATACAGCAGAGAGGGAATGAAAGTGATTTCAACTATTACAATGTATGTGGTGCTGATTCCATGTTTCAAGATCCTGAAAATAGGAATCCACAGTCTTTACACATGAATCATCAAAATGAACTGACACAAAAAAGATGGGGAGTTGGTGTTACAGCATCAAATCCTTCTAATATGTTACAATCCATGCAAGCAATGTCACCATTTGTTAACATGGAGGCACAGCCGAGTGCTGCCTATAGGAACGAAGGAAGAATGATTCATCAAGGAGTAGGAAGGGAACCGGTAGTCATGATGCAGCATCCTCATTTCGCCGATGCCAAACAAAATTATCTGAATTCTATGAATGCTGCCATACCTTCAGCAACATCTGGTTGGTATGTAAACAATGTTCCGGCATATGAAAATACAAGGTTGAATGGGAATTTACTACTACAAAATCACAGTATGGGAACTGTCGGCACAGATCGCTTGCAGCAACTTTCTCAAGCTCCTTATAAAGAATATTCCCATGGATTTGGGCCAGTAGACTCATCAATCTCATCAGGTGGAATGGGAGGTTTCTATAAACCAATGGCATCGTCGCCTTCACCTGCAATGCCTTCTCACTCTCAACAACATCATGGTTCATGGAACACCGCCGCATCTTCACCTGCACTTACGGTTCCACCTTCACTTGGATTATTTTGTGGTCATCAGAATCCATCAGCCAGATCATTCAGCTCACATTCGCATGTGGATTGGAATACCGGGGGCATGGTGCAAGAATTCGACTACAACAATATCGATTGGAGTTTGGATTGCCCATCGTCATCCAGATCAGGTGATGTTTGGCTAGGGTTCTCATCATCATTGAGAAACAGTGCCGGGAATAGGATGGCCAGTTCTTACATGACAGGATCGCGAAATGTCAGCACAGCGAAGGAAACTTCGTCGTCTGCTGGCTTGCGAGATTGGACCTCGCCTTTTGCTGGGAAGGACATATTCAGTGTTCCCAGGAAGATTGTTACCTTTCCTCCTATGTAG	1878	0.4201	MSPSMKSKSKSKEKASAKAIKEQQKTSPKNSGSTNDESGIPASVCDPITETVQTLETSLADSFAKINDTDDHSSSPQGTVSEYDSVSNNGSCSGESEDTKEKAASSSTRLDIIPGCDTDRRDKIRLKNERKHQRQRERRAHELHERCGMFLVSRKLEKLTEKLVAMGFSSEQATLALKLNEGKLEESISWLIDGSEAKDTTKLTSESNLKIDISEELQQIYAMEVKYNCSKQEVERVVVACEGDLQKADDTLKSQKQESPMNQSEDSAQNNSLTRSHELQPASVSIQQRGNESDFNYYNVCGADSMFQDPENRNPQSLHMNHQNELTQKRWGVGVTASNPSNMLQSMQAMSPFVNMEAQPSAAYRNEGRMIHQGVGREPVVMMQHPHFADAKQNYLNSMNAAIPSATSGWYVNNVPAYENTRLNGNLLLQNHSMGTVGTDRLQQLSQAPYKEYSHGFGPVDSSISSGGMGGFYKPMASSPSPAMPSHSQQHHGSWNTAASSPALTVPPSLGLFCGHQNPSARSFSSHSHVDWNTGGMVQEFDYNNIDWSLDCPSSSRSGDVWLGFSSSLRNSAGNRMASSYMTGSRNVSTAKETSSSAGLRDWTSPFAGKDIFSVPRKIVTFPPM	625

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g01533	625	MobiDBLite	consensus disorder prediction	47	94	-	-
	Trre15g01533	625	MobiDBLite	consensus disorder prediction	481	498	-	-
	Trre15g01533	625	MobiDBLite	consensus disorder prediction	1	116	-	-
	Trre15g01533	625	MobiDBLite	consensus disorder prediction	21	40	-	-
	Trre15g01533	625	MobiDBLite	consensus disorder prediction	476	498	-	-
	Trre15g01533	625	MobiDBLite	consensus disorder prediction	255	277	-	-
	Trre15g01533	625	MobiDBLite	consensus disorder prediction	121	140	-	-
	Trre15g01533	625	SMART	uba_6	156	193	IPR015940	-
	Trre15g01533	625	MobiDBLite	consensus disorder prediction	253	277	-	-
	Trre15g01533	625	PANTHER	UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B PROTEIN	1	623	-	-
	Trre15g01533	625	ProSiteProfiles	Ubiquitin-associated domain (UBA) profile.	154	194	IPR015940	-
	Trre15g01533	625	Gene3D	-	122	208	-	-
	Trre15g01533	625	SUPERFAMILY	UBA-like	158	196	IPR009060	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g01533	Trre-Chr15	12174483	12176360	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g01533	7	272	EF-hand Containing Proteins	AT5G12120	47.482	8.43e-67	228