Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01531 ATGAAGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATTATGCAAGCTGATGAGGATGTTGGAAAGATAGCATTAGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAGCTGTTTCTGCAAGATCTTTGTGATCGTACTTATGAAATAACTCTTCAAAGAGGAGCGAAAACCATGAACTCGTTGCATTTAAAACATTGTGTACAAAGCTATAATGTTTTTGACTTTCTGAAGGATGTAGTCAGCAAGGTTCCTGACTACGGCCATGGTCATGGCCATACTGATGCTGGTGCTGATGATCACGCCATTTCAAAAAGAAGGAAAGCTGCGGGTGATGATGGTAATGAAAGCGACGAAGAAGTTAAGAGGGGCAAAATGCTTGAATTGGGCCACACTAGCCCGACTGGTAGGGGAAGAGGCCGAGGTAGAGGTAGAGGACGTGGTCGAGGCCGTGGACGAGCTATACCAAGAGAAGGACATCATCTGGACATTGAGTCTGAGCCTTGTCCTTCTGTTCAGCAAGTTAGCCAACATACTTCAGATACAAATGTGGCTATACTTGATGGCTCAGAGTCAAATGAGTTACCAAAGCCGAGTGTTGTTATTCTTCCTGTAGATAACTCCGACTCACTCCTTAACATTGATCTGAATGCCAATATGAACGAAAATGATGACAAAAAGACTAGTGCAGTTGCTAATCTCACACCAGCTGATCCTGAACCTGCTAATCCCTCATTGTCTGAACCTCCTCCAACAGACATCAAGCATCATGAAGAAATTCCAGGCTGGTCCCTTTCTGATGTGGACAAGATGGCCATTGATTCAATGCAGCTTGCACAGCTTGGTACGCGGATGGATGAGGACGATGAAGATTATGACGAGGAAGGGTAA 900 0.4467 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLKDVVSKVPDYGHGHGHTDAGADDHAISKRRKAAGDDGNESDEEVKRGKMLELGHTSPTGRGRGRGRGRGRGRGRGRAIPREGHHLDIESEPCPSVQQVSQHTSDTNVAILDGSESNELPKPSVVILPVDNSDSLLNIDLNANMNENDDKKTSAVANLTPADPEPANPSLSEPPPTDIKHHEEIPGWSLSDVDKMAIDSMQLAQLGTRMDEDDEDYDEEG 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01531 299 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 113 - -
Trre15g01531 299 MobiDBLite consensus disorder prediction 94 158 - -
Trre15g01531 299 FunFam dr1-associated corepressor homolog 1 86 - -
Trre15g01531 299 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Trre15g01531 299 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Trre15g01531 299 MobiDBLite consensus disorder prediction 94 130 - -
Trre15g01531 299 SUPERFAMILY Histone-fold 3 89 IPR009072 GO:0046982
Trre15g01531 299 MobiDBLite consensus disorder prediction 235 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01531 Trre-Chr15 12159691 12161945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01531 1 288 CCAAT-HAP5 Transcription Factor Family AT3G12480 47.841 6.49e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre15g01531 CBFD_NFYB_HMF 2.3e-19 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01531 15 12159691 12161945 Trre15g01531 15 12159691 12161945 ECH