Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01488 ATGGGAAGTAGAATCCGAGTTGGTGTTGAAGATGAGAAGGGAGCCGAAACAGGCATGCCGAGCTTCAATTCCGATGATGCACGCTATACAGAGGGGAACGCAGTTGATACTTTTCATGTTTCTGACTTTGGAGCATTTGGTCAACCATATCGTTTAGAGGATGCTGTTGTTCTGAGTGGAAATTCAAACTCGGTTTTTAACTCAATTAAAGTAAGTAGCCGAACTATTTCTCCTGGCCCTGTTCACACTAGTACTTTGCCAACATCACTTGATAAAGGCCCATCGACGAACCAAACAGAGCCGCATAGGTTGCAATTAACAAATCTTCAATCATCAAATCCCGGCAGTGGTAACATATTAAGTGTCCGTACAGAAAACCAGGAAGAGTTTGCCATGGCCGATGCCAGTCCTAGGACTGATATTTCAACAGATGGTGACACCGATGACAAGAATCAGCGGTTTGATAGAAATCAATCTCTTGCTCCTGTGGGTTCTGACTCCAGTGATAGATCAAAGGATAAATCAGATCAGAAGACTCTCCGCAGGCTCGCTCAGAATCGTGAGGCGGCAAGAAAAAGCCGGTTGAGAAAGAAAGCCTATGTCCAACAGTTGGAAAGTAGTCGTTTGAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGAGCTCGACAACAGGGAGTCTTCATATCAAGTTCGGGTGAACAAACTCATTCAATGAGTGGAAATGGGGCAATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAACTGAGAGCAGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGATATTTTTAGGCTGAAAGGTGTTGCAGCTAAGGCCGATGTTTTCCACTTGTTGTCTGGCATGTGGAAAACGCCTGCTGAGAGGTGTTTTTTATGGCTTGGTGGTTTTAGGTCGTCTGAACTTCTCAAGCTTCTGGTAAGTCAATTGGAACCTCTCACAGAGCAGCAATTGATGGGTATTACCAACTTGCAACAATCCTCCCAACAAGCAGAAGATGCATTGTCTCAGGGCATGGAAGCATTACAACAGTCCCTTGCAGAGACATTGTCCACTGGCGCACCTTCCTCATCTTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTTGGGACACTCGAGGGTTTCATTCGACAGGCTGACAATCTGCGCCAGCAGACGCTACAACAAATGCACCGAATATTGACAACACGGCAATCAGCTCGTGCACTCCTTGCCATACATGATTACTTTTCGCGGCTGCGTGCTCTTAGCTCCCTCTGGCTGGCCCGTCCAAGAGATTAA 1395 0.4581 MGSRIRVGVEDEKGAETGMPSFNSDDARYTEGNAVDTFHVSDFGAFGQPYRLEDAVVLSGNSNSVFNSIKVSSRTISPGPVHTSTLPTSLDKGPSTNQTEPHRLQLTNLQSSNPGSGNILSVRTENQEEFAMADASPRTDISTDGDTDDKNQRFDRNQSLAPVGSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGEQTHSMSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDDIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVSQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPSSSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01488 464 Coils Coil 254 274 - -
Trre15g01488 464 Coils Coil 197 224 - -
Trre15g01488 464 Gene3D - 177 226 - -
Trre15g01488 464 SMART brlzneu 174 237 IPR004827 GO:0003700|GO:0006355
Trre15g01488 464 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700|GO:0006355
Trre15g01488 464 MobiDBLite consensus disorder prediction 141 155 - -
Trre15g01488 464 FunFam BZIP family transcription factor 177 226 - -
Trre15g01488 464 MobiDBLite consensus disorder prediction 74 100 - -
Trre15g01488 464 CDD bZIP_HBP1b-like 178 230 - -
Trre15g01488 464 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 220 IPR004827 GO:0003700|GO:0006355
Trre15g01488 464 PANTHER TRANSCRIPTION FACTOR TGA9 131 463 - -
Trre15g01488 464 SUPERFAMILY Leucine zipper domain 178 221 IPR046347 GO:0003700|GO:0006355
Trre15g01488 464 Pfam Seed dormancy control 260 336 IPR025422 GO:0006351|GO:0043565
Trre15g01488 464 Pfam Basic region leucine zipper 174 220 IPR004827 GO:0003700|GO:0006355
Trre15g01488 464 MobiDBLite consensus disorder prediction 1 28 - -
Trre15g01488 464 ProSiteProfiles DOG1 domain profile. 243 461 IPR025422 GO:0006351|GO:0043565
Trre15g01488 464 MobiDBLite consensus disorder prediction 130 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01488 Trre-Chr15 11694070 11700581 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre15g01488 DOG1 1e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01488 15 11694070 11700581 Trre15g01488 15 11694070 11700581 ECH