Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01464 ATGGAAGATAATCCTACAAGTCTTATGGAAGGGAAGGTTGTTGGGATCCGATTCAGTATGGCTACACGCCAGGAAATTAGTACTGCATCAATTAGCGATTCCCAAATTAGCCATGCTACTCAGCTGGGAAATCCATTTCTTGGTCTTCCACTAGAGTTTGGACGATGTGAATCTTGTGGCACTTCCGAAGCAGGGAAATGCGAAGGCCACTTTGGTTACATCGAACTTCCAGTGCCAATATACCATCCTAGTCATGTTACTGAGTTGAAGCGGATACTGAGCCTAGTATGCTTAAGCTGCTTAAAACTGAAGAAAACAAAGGGACCTTCTTCAAGCAGTGGTTTGGCACAGAGATTATTATCTCCTTGTTGTGAGGATGTTAATGCTTCACAAGTTTCTATTCGGGAGGTCAAAACAGCTGATGGGGCTTGTTACTTAGCACTGAAGGTGCCAAAGACAAAGATGCATCAAGGATTTTGGAGTTTTTTAGAAAAATATGGCTATCGCTATGGGGGTGATCATACTCGAGCTTTGCTTCCTTGTGAGGCGATGGAAATTATTAAGAGAATTCCTCCAGATATAAAAAAGAAACTTGCTGCAAAAGGATATTTTCCTCAAGATGGATATGTTTTGAAATACCTTCCGGTACCACCAAATTGCTTGTCTGTGCCAGTAGTTTCGGATGGTGTCAGTATCATGTCTTCGGATCCTGCCATGACGATTCTTAGAAAATTGCTTAGGAAGGTTGAAGTCATCAGAAGTTCTAGATCTGGCGAGCCAAACTTTGAGTCTCATCAAGTGGAAGCTAACGATTTGCAATCCGTGGTTGATCAGTATCTTCAAATTAGGGGTACTTCTAAGGCCGCGCGTGATATAGAAACACATTATGGGGTCAATAAAGAGCTGAATGATTCCTCAACAAAAGCATGGTTAGAGAAAATGAGGACTTTATTTATAAGAAAGGGTTCAGGGTTTTCTTCCCGGAATGTAATAACTGGAGATGGCTATAAGAAAATAAATGAAGTAGGAATACCACTTGAGGTTGCCCAAAGGATAACATTTGAGGAGAGAGTAAGCAGCCATAACATCCATTATTTACAAAAGTTGGTTGATGAAAACTTGTGCTTGACATACAAGGAAGGTTTGTCAACTTACTCGCTAAGGGAGGGCTCAAAGGGGCACACTTATCTTAAAATAGGTCAGGTCGTCCATAGGAGGATTATGGATGGTGATACGGTCTTCATCAACAGACCGCCAACTACCCACAAGCACTCCTTACAAGCACTTGTGGTGTACATCCACGACGACCACACAGTCAAAATTAATCCACTTATATGTGGACCCCTCGGAGCGGACTTTGATGGTGACTGTGTCCATCTTTTTTATCCCCAGTCGCTTGCTGCTAAAGCTGAGGTTTTGGAGCTTTTCTCTGTAGAGAAGCAACTCCTCAGCTCTCACAGTGGCAATTTGAACCTTCAGTTATCTTCAGATTCGTTACTGTCACTAAAAATGCTAGTCAAGAGTTGTTTTTTGGATAGAGCAACAGCAAATCAAATGGCAATGTTTCTTTCACTGCCTTTGCCAATGCCTGCTTTGCTTAAGGCCTCTTCTGGTGATCCTTGTTGGACATCCATTCAAATTTTGCAGTGTGCTTTGCCTTTCTCGTTTGATTGTACTGGAGTACGATACTTGATTAGACAGAGGGAAATCTTAGAATTTGATTTTACCAAAGATGTCTTGCCTTCAGTTATAAATGAAATAGCAGCATCAATTTTTTTTGGCAAGGGTCCTCAGGAGGCACTCAATTTCTTTGACGTGATCCAGCCCTTTCTGATGGAAAACATATTTGCCCATGGATTTAGTGTTGGATTACAAGACTTTTCAATATCCAGGGCAGTGAAAAGAGTTATAAATAGAAGCATTGGGAAAGTTTCTCCTTTGTTGCGTCAGCTAAGGGACATATATCAAGAGCGTGTGGCTCAACAATTGGAGAACCTCATTCAAGATATTGAACTTCCGGTCATAAATTTTGCTTTGAAGTCAACCAAACTTGGAGATTTGATTGACTCGAAGAGTAAGTCGGCGGTTGACAAGGTGGTTCAACAGATTGGCTTTTTAGGCCAACAACTCTTTGAGAGAGGAAAGTTTTATTCCAAGGGATTGGTTGAGGATGTAGCTTCCCATTTTCATGTGAAGTGTTTCTATAAAAAGGAAGATTATCCCTCTGCCGAGTTTGGCTTACTCAAAGGATGCTTTTTTCATGGTTTAGATCCATATGAAGAGTTGGTGCATTCAATTGCAACGAGAGAAATAATTGACCGCTCTTCTAGAGGATTATCTGAACCAGGCACACTATTTAAGAACTTGATGGCCATCCTCCGCGATGTTGTTATTTGCTATGATGGAACTGTGAGAAATGTGTGTAGTAATTCCATCATCCAATTTGAATATGGCATACAATCTGGAGACGCAGCGCAACACTTATTCCCTGCTGGTGAGCCTGTAGGTGTCTTAGCTGCAACTTCCATGTCTAACCCTGCTTATAAAGCAGTCCTTGATGCTAGTCCTAGCAGTAATTCTTCCTGGGGATTTATGAAGGAAATACTCCTTTGCAAGGTGAACTTCAGGAATGAACCAAATGATCGCCGTGTAATTTTATATTTAAATGATTGTGATTGCGGTAGGAATTATTGTCGAGAACGTGCTGCATATTTGGTTAAAAATCAATTAACCAAAGTAAGCCTCAAGGATGCAGCAGTAGATTTCATTGTTGAATACCAGCAGCAGCGAAGACGCAATGATGGTACTGAAGATGCAGGCCTTGTTGGTCATATTCATCTAAATGAGGTGATGTTAGAGAACCATAAGATCAATATGGCTGAAGTTTACCAAAAATGCCAAGAGAAACTTGATTCCTTTAGTCGGAAGAAGAAAATTTACCCAGTTTTAAGGAGAACCGAATTGTCTTTCAGCGAGTCATGCTGTTCCCCGAATTATTTTGCCCCTTGTGTAACGTTCCTTTGGCCGGATGGTGATGATTTGGACCAAACAACCAAAGTCCTTTCTGACATGATCTGCCCAGTTCTGTTAGAATCCATAATCCAAGGAGATCCTCGTATCAGCTCGGCAAGTATAATCTGGGTTAATCCTGGAACAAACACATGGGTCCGTAACCCATCCAAATCTTCTAATGGTGAATTAGCACTGGACGTCATTCTTGAGAAGGAAGCTGTTAAAGAAAGTGGTGATGCTTGGAGGATTGTACTTGATTCCTGTCTTCCTGTTCTTCATTTGATTGATACTAGGCGTTCTATACCCTATGCTATTAAGCAAATTCAGGAATTACTGGGGATATCATGTACTTTTGATCAAGCGATTCAGCGTCTTGCAGCCTCGGTAAGAATGGTGGCCAAAGGTGTTCTCAGAGAGCATCTCATTCTCTTGGCAAGTAGTATGACTTGTGGTGGGAATTTGGTTGGCTTTAATACCGGTGGTTATAAAATGCTGGCTCGTCAATTGAATATTCAAGTACCATTTACCGATGCAACACTCTTTACTCCAAGAAAATGCTTTGAAAGAGCTGCTGAGAAACACCATGCAGACTCTTTGTCAAGCATAGTTGCTTCCTGTTCCTGGGGTAAGCATGTGGCGGTTGGTACAGGATCTAGATTTGATATTGTATGGGATCCCAAAGAGATAAACAAAAATGAAATTGAAGGGATGAATGTTTACAATTTTCTTCACATGGTCAAAGGCCTTGCTAATGGGGAAGAAGAAAACAATGCTTGTTTGGGTGAGGACATTGATGATTTGCTTGATGATGAAAATGTGGACTGGGATATGTCCCCACAGCATACCTCTGGATTTGATGCTGTCTTTGATGAGACTTTTGAACTACTGAGTGGCCCAACATCAAATGGTTGGGATTCAAATAAAGACCAGATTGATCAGACCAAAACAAACTCAAATGATTGGTCTGGTTGGGGACAAAAAAAATCTGAAATACAAGAAGACTCTTCAAAGTCTAGTGCTTGGGGCGCTACCACCAATCAAAATAAAGATCAATCTTCTAGTGCTTGGGGAGCTACCACCAATCTAAACAATGATCAATCTTCTAGTGCTTGGGGGGCTAAAAGTAAAGCTGCTGCACAAGATGCAGTACAAAACACCCAATGGGAGTCCGGGATTCAAGAAGACTCTGCAAAGTCTAGTGCTTGGGGGGATACTGTCAATCAAAATAATGATCAATCTTCTAGTGGTTGGGGGGCTAAGAGTAAAGCTGCTGCACAAGATGCAGTACAAAACACCCAATGGGAGTCCGGGATTCAAGAAGACTCTTCAAAGTCTAGTGCTTGGGGGGCTACAACAAATAAAAATAATAATCAGCCTTCTTGGGATACAAATAAGAGTGGTGTACAAGATGATACAGTACAAAACTCTTCAAAGTCTGGTGCTTGGGGGGCTGCTACAAGTCAAAATAGTGATGGACCTCAAAATGCTACGTGGGTGTCTGGGAGCTCTCAAAAGTCTAGTGCTTGGGGGGCTGCAACAAATAAAAATAATAATCAGCCTTCTTGGGGTACAAATAAGAGTGGTGTACAAGATGATACAATACAGAACTCTTCAAAGTCTGGTGCATGGGGGGCTGCTACAAGTCAAAATAGTGATGGAACTCAAAATGCTACGTGGGTGTCTGGGAGCTCTCAAAAGTCTAGTGCTTGGGAGGCCAACACAATTCAAAACAGTGGTAACCCCTCATGGGGAAAAAACAATACAGGAGTTCAAGATGTTGGAGAGGAAAGGGCCCAAGAAGATTCTGGGAGCATTAAAAAATGGCAAGCAGATGGTATCCAAGAAGACTTGTCAAGCTCAGGTGGTTGGAAAGCTTGGGGAAAAGGTAAAGCTGATGGACATGAGGGTGAGTCTATAAAAGTACAAGAAGATTCTTGGAACTCTCGGAAATCAAAAGCTGGAGCTGATGTTACCCAAGAAGACTCTGCGAAGTCTAGTGCTTGGGGTGCAGTCAAAGATGCAACAAAATCCAAGTCGAATGATTGGTCCTCGTGGGGAGGGAAAAAAGATGAAATACATGTTATTGCAGAAGACTCTTCTAGATCTAGTGCTTTGGAACATAAACCGGACAATGTTAAGGACAGTTGGGATGCCAAATTGCCAGTTGCCAATAGCTCTTGGGGAAAGCCCACAGCACCAGAAAACCAACCTTGGGATAACAAGAATGATTCATCAAATAGCTCTTGGGGAAAACCTAAACCACAAGAAAACCAGCCATGGGATTCCAAAACCGAGCCAAATAGTAGCTCTTGGGGAAAACCCAAATCCCAAGAAAACCAGCCTTGGGATTCCAAAACCGAGCCAAATAGTAGCTCTTGGGGAAAACCCAAAACGCAAGAAAACCAGCCTTGGGATTCCAAAACCGAGCCAAATAGTAGCGCTTGGGGAAAACCCAAATCGCAAGAAAACCAACCTTGGGCCAAGAATGACTCGAATCAAAGTGCAAGTTCACGTGGATGGGACTCGCATGTTGCCTCTGCTAACTCTGAAGGCGACAGGAGTTTTCAGTGGGGTAAACAAGGAAGAGACTCATTCAAGAAAAATCAGTTTGAAGGTTCACAAGGCCGGGGTTCAAATGCTGGGGACTGGAGAAATCAGAATCGCCCTGCCAGAGGAGCACCTGGACAGAGGTTTGAGTTATACTCTTCTGAGGAGCAAGATGTTCTCAAGCATATTGAACCTATTGTGCAGTCCATCAGAAAAATCATGCAGCAAGAAGGATACAATGATGGGGATCCGCTAGCTGCTGATGACCAAAAGTATGTTCTTGAGAATGTCTTTGAACATCATCCAGATAAAGAAACAAAAATGGGTGCCGGAATTGATCATGTCATGGTTAGCAGACACAGCAATTTTCAGGACAGCAGATGCTTGTATGTGGTTCTAAAAGATGGTAAAAGAGAAGACTTTTCGTACCGCAAGTGCCTGGAAAACTTAGTGAGGAAGAAATTTCCAGAAACTGCTGAATCGTTTTGCGGAAAATATTTTAGGAAATCCCAACCCCGTGTAAAGAGGGACCAGACTCCAAATCCAGCAGGGGAGCAGACTGCAACTCCAAACCCAGCAGGGGAGCAGACCTCTACACCAAATCCAGTAGGAGAGCAGACAACTACTCCAGCTGGGGACCAGACTTCAACACCAAATCCAGCGGGGGACCAGACCACAACTCCAATGGCTATGGAAACCAATGAGTAG 6267 0.4257 MEDNPTSLMEGKVVGIRFSMATRQEISTASISDSQISHATQLGNPFLGLPLEFGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVTELKRILSLVCLSCLKLKKTKGPSSSSGLAQRLLSPCCEDVNASQVSIREVKTADGACYLALKVPKTKMHQGFWSFLEKYGYRYGGDHTRALLPCEAMEIIKRIPPDIKKKLAAKGYFPQDGYVLKYLPVPPNCLSVPVVSDGVSIMSSDPAMTILRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGTSKAARDIETHYGVNKELNDSSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKKINEVGIPLEVAQRITFEERVSSHNIHYLQKLVDENLCLTYKEGLSTYSLREGSKGHTYLKIGQVVHRRIMDGDTVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLSSDSLLSLKMLVKSCFLDRATANQMAMFLSLPLPMPALLKASSGDPCWTSIQILQCALPFSFDCTGVRYLIRQREILEFDFTKDVLPSVINEIAASIFFGKGPQEALNFFDVIQPFLMENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLRDIYQERVAQQLENLIQDIELPVINFALKSTKLGDLIDSKSKSAVDKVVQQIGFLGQQLFERGKFYSKGLVEDVASHFHVKCFYKKEDYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDAAQHLFPAGEPVGVLAATSMSNPAYKAVLDASPSSNSSWGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRNYCRERAAYLVKNQLTKVSLKDAAVDFIVEYQQQRRRNDGTEDAGLVGHIHLNEVMLENHKINMAEVYQKCQEKLDSFSRKKKIYPVLRRTELSFSESCCSPNYFAPCVTFLWPDGDDLDQTTKVLSDMICPVLLESIIQGDPRISSASIIWVNPGTNTWVRNPSKSSNGELALDVILEKEAVKESGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVRMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKMLARQLNIQVPFTDATLFTPRKCFERAAEKHHADSLSSIVASCSWGKHVAVGTGSRFDIVWDPKEINKNEIEGMNVYNFLHMVKGLANGEEENNACLGEDIDDLLDDENVDWDMSPQHTSGFDAVFDETFELLSGPTSNGWDSNKDQIDQTKTNSNDWSGWGQKKSEIQEDSSKSSAWGATTNQNKDQSSSAWGATTNLNNDQSSSAWGAKSKAAAQDAVQNTQWESGIQEDSAKSSAWGDTVNQNNDQSSSGWGAKSKAAAQDAVQNTQWESGIQEDSSKSSAWGATTNKNNNQPSWDTNKSGVQDDTVQNSSKSGAWGAATSQNSDGPQNATWVSGSSQKSSAWGAATNKNNNQPSWGTNKSGVQDDTIQNSSKSGAWGAATSQNSDGTQNATWVSGSSQKSSAWEANTIQNSGNPSWGKNNTGVQDVGEERAQEDSGSIKKWQADGIQEDLSSSGGWKAWGKGKADGHEGESIKVQEDSWNSRKSKAGADVTQEDSAKSSAWGAVKDATKSKSNDWSSWGGKKDEIHVIAEDSSRSSALEHKPDNVKDSWDAKLPVANSSWGKPTAPENQPWDNKNDSSNSSWGKPKPQENQPWDSKTEPNSSSWGKPKSQENQPWDSKTEPNSSSWGKPKTQENQPWDSKTEPNSSAWGKPKSQENQPWAKNDSNQSASSRGWDSHVASANSEGDRSFQWGKQGRDSFKKNQFEGSQGRGSNAGDWRNQNRPARGAPGQRFELYSSEEQDVLKHIEPIVQSIRKIMQQEGYNDGDPLAADDQKYVLENVFEHHPDKETKMGAGIDHVMVSRHSNFQDSRCLYVVLKDGKREDFSYRKCLENLVRKKFPETAESFCGKYFRKSQPRVKRDQTPNPAGEQTATPNPAGEQTSTPNPVGEQTTTPAGDQTSTPNPAGDQTTTPMAMETNE 2088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01464 2088 MobiDBLite consensus disorder prediction 2023 2088 - -
Trre15g01464 2088 Pfam RNA polymerase Rpb1, domain 2 324 478 IPR000722 GO:0003677|GO:0003899|GO:0006351
Trre15g01464 2088 MobiDBLite consensus disorder prediction 2029 2088 - -
Trre15g01464 2088 Gene3D - 795 835 - -
Trre15g01464 2088 MobiDBLite consensus disorder prediction 1303 1597 - -
Trre15g01464 2088 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 11 1231 - -
Trre15g01464 2088 MobiDBLite consensus disorder prediction 1871 1889 - -
Trre15g01464 2088 Gene3D RNA polymerase Rpb1, domain 3 486 621 IPR042102 -
Trre15g01464 2088 MobiDBLite consensus disorder prediction 1687 1719 - -
Trre15g01464 2088 MobiDBLite consensus disorder prediction 1303 1898 - -
Trre15g01464 2088 Gene3D RNA polymerase II, clamp domain 6 120 IPR044893 -
Trre15g01464 2088 Pfam RNA polymerase Rpb1, domain 5 755 1167 IPR007081 GO:0003677|GO:0003899|GO:0006351
Trre15g01464 2088 Gene3D - 1910 2006 - -
Trre15g01464 2088 MobiDBLite consensus disorder prediction 1732 1859 - -
Trre15g01464 2088 SMART rpolaneu7 207 506 IPR006592 GO:0003677|GO:0003899|GO:0006351
Trre15g01464 2088 PANTHER DNA-DIRECTED RNA POLYMERASE 18 1228 IPR045867 GO:0003899|GO:0006351
Trre15g01464 2088 Pfam Protein of unknown function (DUF3223) 1931 2000 - -
Trre15g01464 2088 Gene3D RNA polymerase ii 353 405 - -
Trre15g01464 2088 Pfam RNA polymerase Rpb1, domain 1 40 281 IPR007080 GO:0003677|GO:0003899|GO:0006351
Trre15g01464 2088 MobiDBLite consensus disorder prediction 1632 1661 - -
Trre15g01464 2088 Pfam RNA polymerase Rpb1, domain 3 481 626 IPR007066 GO:0003677|GO:0003899|GO:0006351
Trre15g01464 2088 Gene3D - 321 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01464 Trre-Chr15 11445944 11463363 Tandem