Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01422 ATGGGGGCTGCTTGTTGTGTTGCATCCAGAGATAAAACTATTCAAAGTGGACAAACCGGTGAAATCGGGCATAGGAATGTTCGGTGTTCACCGACATGGAGCTTGCGGTGGGATAATAGAGGCCGTGTAGCCGGAGAAGATACTAGTATAAATTGGTTTTCTGATGGTGTTAGCAGCAACGACAGACTGGAGAATAAAAATGAATCGCATGTATCTGAGGATGGAAGCCCGTTGCAGAATTATCAAAGGAATAGATGGCAAAAATCCCCAATTTCTGATGGAACTGCTAGACACACAAAATCATTTTCTGATCAATCTATTTCAAGGAATGTTTCCATGGCTGAGAGAATGGAACAGGTGAAGGAGTTAGAAGAATCATCAGCAGTATCATGTCCATTTCCAACAAAAACTTCACCCACATTGTCTTCTACTTCGTTGTCAATATCTCTTCTTCCACCCCAAAGCCACCTACCTCCATCCTGCTCAACACCATTAAGGTGGCCCTCCCGTTCCACAGGACACCAGTTATCACGACAAGTTTCTGATAGCCGAATCATGGGATTTAAGTCACATAGCAACTTTAATGCATCTGAAGAAAGGCCAGTGTTTCCCTCATGGAGTAATGAATATGGTATGCACTCTGGTGGTGGATCTTCAGATTATTGCTCTAGGCCTGGCTTTACTGAGCTGATGGGAAATTCTCACATGGAAAGATGGTCATTTGATAGTGAGTCATTTGGTTTTAATTGTGAAAGGTTGGCTAGGTTCAGTAATCGGGTTTCAACTTCTCCGGTTGATTCACAAACATGTGGTGTTTGCTCAAAACTTTTAACTGAAAAGTTGTCTTGGAGCAGTCAAAAGATTATTGCGAATAATGACCTTTCTGTAGTTTCTGTTCTTATTTGTGGACATGTCTATCATGCTGAATGTTTAGAGAGTTTGACACCTGAAATAAACAAGTACGATCCAGCTTGCCCTGTTTGCACTTTCGGTGAAAAACAAACCCGTAAATTGTTTGAAAAAGCTTTGAAAGCTGAATTGGATTCAAAAGCTAGAAATAAGTATTCAAGGAATCAAATTGTGTATAATGATTTGGATGATGACGATGATTTTGTTGTATTTGATCAGTTTAAAGATAAAAGGCATCAAAATAAAGGTTTTAGAATGGACTCTAATTCTAACAAGAGAAGCTCTTCTGGAAAACCTTTTCTGAGTAAACACTTCTCGTTTGGCTCAAAGAGTTCTAAATGCATGTTAGATAATCACCCAACCCGAAAGAAGGGCTTTTTTTGGGCAAAGTCTAGCAAGGAATAA 1314 0.398 MGAACCVASRDKTIQSGQTGEIGHRNVRCSPTWSLRWDNRGRVAGEDTSINWFSDGVSSNDRLENKNESHVSEDGSPLQNYQRNRWQKSPISDGTARHTKSFSDQSISRNVSMAERMEQVKELEESSAVSCPFPTKTSPTLSSTSLSISLLPPQSHLPPSCSTPLRWPSRSTGHQLSRQVSDSRIMGFKSHSNFNASEERPVFPSWSNEYGMHSGGGSSDYCSRPGFTELMGNSHMERWSFDSESFGFNCERLARFSNRVSTSPVDSQTCGVCSKLLTEKLSWSSQKIIANNDLSVVSVLICGHVYHAECLESLTPEINKYDPACPVCTFGEKQTRKLFEKALKAELDSKARNKYSRNQIVYNDLDDDDDFVVFDQFKDKRHQNKGFRMDSNSNKRSSSGKPFLSKHFSFGSKSSKCMLDNHPTRKKGFFWAKSSKE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01422 437 MobiDBLite consensus disorder prediction 122 147 - -
Trre15g01422 437 SUPERFAMILY RING/U-box 265 329 - -
Trre15g01422 437 PANTHER EXPRESSED PROTEIN 1 334 - -
Trre15g01422 437 CDD RING-H2 270 328 - -
Trre15g01422 437 MobiDBLite consensus disorder prediction 384 404 - -
Trre15g01422 437 MobiDBLite consensus disorder prediction 72 109 - -
Trre15g01422 437 MobiDBLite consensus disorder prediction 153 172 - -
Trre15g01422 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 330 IPR013083 -
Trre15g01422 437 MobiDBLite consensus disorder prediction 130 147 - -
Trre15g01422 437 MobiDBLite consensus disorder prediction 58 109 - -
Trre15g01422 437 MobiDBLite consensus disorder prediction 390 404 - -
Trre15g01422 437 ProSiteProfiles Zinc finger RING-type profile. 270 329 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01422 Trre-Chr15 11102765 11105961 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01422 15 11102765 11105961 Trre15g01422 15 11102765 11105961 ECH