Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00555 ATGCAAGACCCAACAACATTCCAACCCATGAAACCAAATTTTCCAGAACAAGAACAACTCAAATGTCCACGTTGTGAATCAAGCAACACAAAGTTCTGTTACTACAACAACTATAATCTCTCACAACCTCGTCATTTTTGCAAAAACTGTAAAAGGTATTGGACCAAAGGTGGTTCTTTAAGGAACATTCCTGTTGGTGGTGGAACAAGAAAAGCCACAAAACGTTCATCAAATCCCAAACGTTCAACAACAACACCATCGTTATCTTCTTCAGCTCAAGCTTCTCCAGTTACAGAATCTGACCCGACCCAGATTAAGAATAACCCGGTTGAGGAAAACCAAAGGGTATTTGGTGGAGGGAGTTTTAGTTCATTTCTTGAATCAACTGAGAGATTTGGGAATCTTTTTCAGGGTCTGAATTCAAATGGGTCGGGTTTAAAAATGGTGCAAATGGGTGAATTTGGGGAGAATTTGAACTGTGACCCGGTTGGGAATTCGGGTCATAATAACCCGAATGGTAGAGATGGTGAATCAGAGATTTTTCTTGGTTTGCAAAATGGTAGTGATTCAAGTTGTTGGAATGGTAATCATGGTTGGTCTGATCTTGCAATATATACACCTAGCTCAAGTTATCAGTAG 639 0.3991 MQDPTTFQPMKPNFPEQEQLKCPRCESSNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGSLRNIPVGGGTRKATKRSSNPKRSTTTPSLSSSAQASPVTESDPTQIKNNPVEENQRVFGGGSFSSFLESTERFGNLFQGLNSNGSGLKMVQMGEFGENLNCDPVGNSGHNNPNGRDGESEIFLGLQNGSDSSCWNGNHGWSDLAIYTPSSSYQ 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00555 212 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Trre15g00555 212 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Trre15g00555 212 MobiDBLite consensus disorder prediction 61 114 - -
Trre15g00555 212 MobiDBLite consensus disorder prediction 78 111 - -
Trre15g00555 212 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 147 IPR045174 GO:0003700|GO:0006355
Trre15g00555 212 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00555 Trre-Chr15 3919719 3920357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00555 5 136 C2C2-Dof Transcription Factor Family AT1G51700 53.472 4.00e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre15g00555 zf-Dof 5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00555 - - zju:107403899 280.796