Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01289 ATGGTTTATACTTCTCTTCCACCATATATGGATCCAGCCAACTGGCATCAACAGCAACCAAATCATCAAGGGGCAAATACTATTGTTAATACTCCTCTTTTTACTACACCATCACAGCCTCCACCATCGAATCTGACACCATCACAGCCTCATGGAGGCTCAATCAGGCCAGGTTCGATGGCAGATAGGGCTAGGATGGCCAACATACCTTTGCAAGAACCATTACAAAAATGTCCAAGGTGTGATTCCACCAACACAAAGTTTTGCTACTACAACAACTACAGCCTCTCACAGCCGCGCCACTTCTGCAAGACCTGTAGAAGGTATTGGACAAGGGGCGGCGCTCTAAGAAGTGTCCCGGTTGGAGGTGGCTGCCGAAGAAACAAGAGAACTAAATCGAGTAGCAACAACACCTCTAAGTCTCCAGTTAGCTCGGATCGTCAAACTAGTTCTGCAAACAACTCTCCCGCGGTACTCAGTTCCCCGACTCCACCACCGATGAGATTCATGCCTCCTATGCATCAACTCGGCGATCACCTCGGTGAAATAGGGTTAAACTATGGTTTTTCTGGTCCAATGGGAGGAGTAGGAGACTTGAATTTTCATATTGGAAGCTCTTTAGGTGGAGGTATTGGTAACGGCGGTGTTGGTGGTGGTGGCGGTTCTGCATCGATTTTACCTGTTAGTGGTTTCGAGCAATGGAGAACGCCACAACAAACTCAACAATTTCCATTCTTGACAAGCTTAGAACCTTCTTCTTCACATGGATTGTTATATCCATTTGAAGGTGGTGGTGGTAATAATCAAGCACATATATATGGTGGTGTCCCTAAGGTATTATCAATTAATTCTAGTGTGAAAATGGAAGAAAATCAATCTAGACAATTCTTGGGAATGATCAATAATAATAACAACAATAATAACCCTAATAATGAACAATATTGGAGTGCTTCTGGTGGTAATGGTGGTGCTACTTCAACTTGGACAGATCTTGCAGCTTTTAACTCTTCTTCAACAACTACCAATTCCAACTATAGAACATAA 1044 0.4349 MVYTSLPPYMDPANWHQQQPNHQGANTIVNTPLFTTPSQPPPSNLTPSQPHGGSIRPGSMADRARMANIPLQEPLQKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRTKSSSNNTSKSPVSSDRQTSSANNSPAVLSSPTPPPMRFMPPMHQLGDHLGEIGLNYGFSGPMGGVGDLNFHIGSSLGGGIGNGGVGGGGGSASILPVSGFEQWRTPQQTQQFPFLTSLEPSSSHGLLYPFEGGGGNNQAHIYGGVPKVLSINSSVKMEENQSRQFLGMINNNNNNNNPNNEQYWSASGGNGGATSTWTDLAAFNSSSTTTNSNYRT 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01289 347 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 50 275 IPR045174 GO:0003700|GO:0006355
Trre13g01289 347 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Trre13g01289 347 MobiDBLite consensus disorder prediction 128 158 - -
Trre13g01289 347 MobiDBLite consensus disorder prediction 12 34 - -
Trre13g01289 347 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Trre13g01289 347 MobiDBLite consensus disorder prediction 120 172 - -
Trre13g01289 347 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Trre13g01289 347 MobiDBLite consensus disorder prediction 12 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01289 Trre-Chr13 10412212 10413414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01289 38 337 C2C2-Dof Transcription Factor Family AT3G55370 42.006 4.96e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre13g01289 zf-Dof 6.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01289 - - tpra:123888034 559.296