Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00193 ATGTTAGAGACAAAAGACTCTGCCATCAAACTGTTCGGTAAAACAATTCCGGTGCCGGAGATTTTTGTCGAAACTCCGGCAATTTTATCTTCTGGTGATGTTGTTGATGAGAGTATTGAATCTATTGATGATGAAAACCATGATTCCTCTACAAACTCTTCAAGGGAGTCACATAATACTAGAGATGATACACATGAGCAAGAGATTGAGAAGGACACATTGGGAGAAAAACAAATTTATGAAAAGAACGAAGGAGTCCCTACACAATCGACGAAAGAATTTACCAATCCAGATGCAACCTCTAGGACTGGAGAAGAATCTGTTACTATGTCCACCGAAAGAGAGTCTACTACGTTGAAAACTTCAAAAACCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAAGACGAGACAAGTAATTCACAAGATAAGAACCTCAAAAAACCCGACAAAATAATTCCTTGTCCTAGATGTAGCAGCATGGACACAAAGTTCTGCTACTATAATAATTACAATGTCAACCAACCCCGTCACTTCTGCAAGAAATGCCAAAGATACTGGACTGCCGGTGGAACCATGAGAAATGTACCTGTAGGTGCCGGTAGAAGAAAGAACAAGAACACTTCTTCTCATTATCGTCAGATAACTGTCTCTGAAGCAACACTCCAAAATTCTCAGATATACCCTTCATTGAAATGCAACGGTACGATCCTTACATTTGGATCCGATACACCCTTGCGTGGATCAATGACATCTGTTTTGAAACTTGCTGATGAATCAGTGCAAAATTACGCAAGAAATGGATTTTGTAAACCAGAAGTACTAAGAATTCATAATCCTCATGCAAGTGGTGAAAAAGGTGATGATCAATCAAATAAATCATCGACTACATCGACAAAGTCTATAGAAGTTGCTAGTACCATTGTATCCCAAGAACAAGCTATACGAAATGGCCAGAGCTTCTCACCACAAGGGGCCTACTTTCCTTCGGGAACTCCTTGGTCTTTCCCATGGAATCAAGTGCAATGGAGCTCACCACCGACTTTTTGTTCACCGGGATTCTCCATGCCATTCTATCCCGGGACATCTTATTGGGGTTGTACTGTGCCAGGGGCATGGAACTTTCCATGGCAAGCACAACCGTCTTTGCCAAATGGTACAAACCGTAACTCTAGTCCAAACTCTCCAATATTAGGGAAACATTCAAGGGATGACAACATGCTTAAATCGAGCGAAGATGATAGGAAAGAAAGTAGAGAAGAAAAGTGTTTGTGGTTTCCAAAAACTTTGAGGATCGATGACTCGGGAGACTTAGAAAAAAGCTCTTTATGGACAACACTTGGGATTAATAATAACAACGCCGACTCAGTTTCTTCAGGAAAACTCTTTAATGCATTCCCTTCAAAGTGTGATGAGAGAAATCACTTGGTAAAAGCAACTTCAGTCTTGCATGCCAATCCAGCAGCTTTGTCTAGGTCTCTTAACTTTCGCGAAACTTCATAA 1527 0.4047 MLETKDSAIKLFGKTIPVPEIFVETPAILSSGDVVDESIESIDDENHDSSTNSSRESHNTRDDTHEQEIEKDTLGEKQIYEKNEGVPTQSTKEFTNPDATSRTGEESVTMSTERESTTLKTSKTEEEEEEEEEEEEEEEEEEQDETSNSQDKNLKKPDKIIPCPRCSSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNTSSHYRQITVSEATLQNSQIYPSLKCNGTILTFGSDTPLRGSMTSVLKLADESVQNYARNGFCKPEVLRIHNPHASGEKGDDQSNKSSTTSTKSIEVASTIVSQEQAIRNGQSFSPQGAYFPSGTPWSFPWNQVQWSSPPTFCSPGFSMPFYPGTSYWGCTVPGAWNFPWQAQPSLPNGTNRNSSPNSPILGKHSRDDNMLKSSEDDRKESREEKCLWFPKTLRIDDSGDLEKSSLWTTLGINNNNADSVSSGKLFNAFPSKCDERNHLVKATSVLHANPAALSRSLNFRETS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00193 508 MobiDBLite consensus disorder prediction 26 161 - -
Trre13g00193 508 ProSitePatterns Zinc finger Dof-type signature. 163 199 IPR003851 GO:0003677|GO:0006355
Trre13g00193 508 MobiDBLite consensus disorder prediction 287 309 - -
Trre13g00193 508 Coils Coil 116 152 - -
Trre13g00193 508 MobiDBLite consensus disorder prediction 388 407 - -
Trre13g00193 508 MobiDBLite consensus disorder prediction 83 117 - -
Trre13g00193 508 ProSiteProfiles Zinc finger Dof-type profile. 161 215 IPR003851 GO:0003677|GO:0006355
Trre13g00193 508 MobiDBLite consensus disorder prediction 388 423 - -
Trre13g00193 508 MobiDBLite consensus disorder prediction 44 79 - -
Trre13g00193 508 Pfam Dof domain, zinc finger 159 215 IPR003851 GO:0003677|GO:0006355
Trre13g00193 508 MobiDBLite consensus disorder prediction 125 146 - -
Trre13g00193 508 PANTHER CYCLIC DOF FACTOR 2 5 508 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00193 Trre-Chr13 1600951 1603700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00193 6 508 C2C2-Dof Transcription Factor Family AT5G39660 40.840 8.31e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre13g00193 zf-Dof 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00193 - - mtr:11410541 706.057