Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04845 ATGTCCAAATCTGCAGGATCAACAAATAGTTCCTCTTCATCAACTAAAAATCATGCTGATAAATTCCTTGATGGACTTGTACCTTCTGGATTTGATAAAGGATCGTGCTTAAGTAGATACCAATCCTACTTATACAGCAAAGTATCACCTTATAAACCTTCTCCGTATCTCATATCCAAACTTCGCAATTATGAAGATCTTCACAGAAGATGTGGACCTCATACTAGTGCTTACAAGAGAACCATGGTAAGTCTTAATAGTTTCAAATCCAATGTTACTACTACTGGATCATGTAAGTACATAGTATGGACACATGTTAATGGCTTAGGGAACAGAATGGTTAGCATGGCTGCGACGTTCCTTTATGCAATCCTCACTGACCGCGTCCTACTAGTGAAGTTTCATGATGACATGGTTGGCTTATTTTGTGAACCATTCCTCAACTCATCATGGTTATTGCCTAATGGTAAAGAATTTCCTTTTAGTACTAACGACAATGGAGAAAAAGATTTTGAAACATATGAAAGCGTGATGAAAAGGGATAGAGAAAACAATTCAAAGGAATTATTATTACCGTTGGTTATGCATCTCAAGATAGAACACACGGATGATGCACATGAAATGTTTTTCTCTTGTGATCATAGCCAACATCTTCTACATAAAGTTCCAATCTTGATTTTAAGATCAGATCAATACTTTGTACCTTCTCTTTTTATGGGTCCATCCTTCGGTCAAGAGCTTAGAAAAATGTTCCCAAACAAAGAAACTGTTTTTCACCATTTGGGACGCTACCTATTTTACCCTTCAAATGATGTATGGGGACCTATCAAAAGGTTCTATCAAGCATATTTGGCCAAGACAGATGAGAAGATTGGAATCCAAGTAAGAGTATTTAATCCCAATCTCACTTCACACCAAACAATCATGAATCAAGTTTTGACCTGCGCACAAAAAAATAAGATACTACCCAATTTCGCCGCAGAAGATTCAAAAGACTCTCCATGGAAAAATCAAACTTCGAAGTCAGTTTTGGTAGCATCTTTATATCGAGAGTATGGTGAGAACCTTAGAACAATGTATTTGAATAGACCAAGTGTTACAGGGGAAATCATAGGGGTTTATCAGCCAAGTCATGAAGAGCATCAAAAGTTTGGCGATAACTTGCACAACAAGAAAGCATTGACAGAAATGTATCTTTTAAGTTTATGCGATGTTTTGGTAACTAGCTCTCTATCAACTTTTGGGTATGTGGCTCAGAGTTTGGGAGGCATAAAGCCATGGGTTCTTTACAAAATACAAGACAACAACCTCCCAGATTCGCCATGTGTGCAAGATGTCTCTATGGAGCCTTGTTATCATATACCTCCTAAACTTGATTGCATGGAGAAACCTATAGATGATGATGTTGGTAAAGCTTTTCCTTACATGAGTAGATGTGTGGACTATGGATTGGGTGTAAAGTTGGTCAATGATCTTCAGTAG 1482 0.3752 MSKSAGSTNSSSSSTKNHADKFLDGLVPSGFDKGSCLSRYQSYLYSKVSPYKPSPYLISKLRNYEDLHRRCGPHTSAYKRTMVSLNSFKSNVTTTGSCKYIVWTHVNGLGNRMVSMAATFLYAILTDRVLLVKFHDDMVGLFCEPFLNSSWLLPNGKEFPFSTNDNGEKDFETYESVMKRDRENNSKELLLPLVMHLKIEHTDDAHEMFFSCDHSQHLLHKVPILILRSDQYFVPSLFMGPSFGQELRKMFPNKETVFHHLGRYLFYPSNDVWGPIKRFYQAYLAKTDEKIGIQVRVFNPNLTSHQTIMNQVLTCAQKNKILPNFAAEDSKDSPWKNQTSKSVLVASLYREYGENLRTMYLNRPSVTGEIIGVYQPSHEEHQKFGDNLHNKKALTEMYLLSLCDVLVTSSLSTFGYVAQSLGGIKPWVLYKIQDNNLPDSPCVQDVSMEPCYHIPPKLDCMEKPIDDDVGKAFPYMSRCVDYGLGVKLVNDLQ 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04845 493 Pfam Xyloglucan fucosyltransferase 9 460 IPR004938 GO:0008107|GO:0016020|GO:0042546
Trre12g04845 493 Gene3D - 95 148 - -
Trre12g04845 493 Gene3D - 274 431 - -
Trre12g04845 493 FunFam Galactoside 2-alpha-L-fucosyltransferase 96 147 - -
Trre12g04845 493 PANTHER FUCOSYLTRANSFERASE 2-RELATED 9 490 IPR004938 GO:0008107|GO:0016020|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04845 Trre-Chr12 61884167 61885648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04845 15 489 Xyloglucan Fucosyltransferase1 AT2G03220 50.420 3.11e-163 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04845 K13681 - gmx:100809919 559.681