Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04500 ATGGCTGAAATCGAAGAAGTTGGTCCTGATGTTTGCTCAGATTTAGATGTTGACGATATTAGAGATCAAAATATACCAGAGAAAGATGTTAGCGACGAGGATATTGAGCCGGAAGATTTGGAGAGGCGGATGTGGAAGGATCGTATCAAACTCAAAAGGCTCAAGGAAAAACAAAAGCTTGAAGCACGGCAAGCTGCAGAGAAGCAAAAGCCTAGGCAGTCATCTGATCAAGCTCGTAGGAAGAAAATGTCGAGGGCACAAGATGGGATTCTTAAGTATATGCTGAAGCTTATGGAAGTCTGCAAAGCTCGTGGATTTGTGTATGGAATCATTCCTGAGAAGGGGAAGCCCGTTAGTGGTTCCTCTGATAACATTAGAGCTTGGTGGAAAGAAAAGGTCAGGTTCGATAGGAATGGTCCTGCGGCCATAGCCAAGTATGAAGCAGAGTGTCTTGCTATGATTGAGGCTGACAATAACCGAAACGGGAACTCTCAGAGCATGCTCCAAGACCTGCAAGATGCAACTCTCGGGTCGCTCTTGTCTTCTTTGATGCAACATTGTGATCCTCCTCAGCGGAAATACCCATTGGAAAAGGGTGTTCCCCCGCCTTGGTGGCCTACTGGGAATGAAGATTGGTGGTTGCATTTGAATTTACCTTACGGTCAGGGTCCTCCGTATAAGAAACCTCATGATTTGAAGAAGATGTGGAAAGTGGGAGTTCTAACTGCTGTTATAAAACACATGTCGCCTGATATTGCAAAAATAAGGAGGCACGTCCGCCAATCAAAATGCTTGCAAGACAAGATGACGGCAAAGGAAAGTTCAATTTGGTTGGGGGTATTAAGTCGAGAAGAAGCTCTCATTAGGCAGCCTAGTAGTGATAATGGTACGTCTGGAATAACAGAAATGCCAGTCGGCCTTCCTATTGAGAATAAGCAACCTGCGACTAGTAGTGCAAGCAACTATGATGTTGAGAACTATGATGTCGATGTTACTGACGATGGTGTTGGTTCTGTTTCTTCCAAAGAAGACAGGAGCAATCAATTTATGGATGCCGAGCCGTCAGATAACTTGCGCAGGAGTTCTGTCAAAGACACAGATCAAGCTCAAAAGCCTAGAAAGAAACGACAACGTACAAGGTCAAAAGCAGCCAACAAATTACCAGCAAGATCTGACAATGAAATTTTAAATGTTGAACCTATAAGCAAAGTGCCCAACATGAATGAAAGAGAAGAGGCGCATGTAGTTGGACTCCTCCAGATTCATGGAAATGAACAGGTCAATGGGACTGATTCTGTTTTGAGACTGCCTGAAAGAGGACACGAGGTGCCAGTTCAACTAGCAGCACCCGAGTTTGATCATTACTCTTATATGCATGCAAACAATGTAATTTCCTCAGAAAACATGTATATGGGTGGAAGGCCATTGCACTATCCTCAATTGCAAAACCCTCCTGACATGCCTCATGAAGATGCTTATATTTTCAATACAGTCGGAGGAGGATATGGTCCTAGTCAGGATGGGCCGCATCAGCATCTGCAGCCTGGTCCTGCCGCAAACATTGAACCAGGATATGGTCCGAGTCAGGCTGGGCCACATCAGCATCTGCTGCCCGGTCCCGCCGCGAACATTGAACCAGGATATGGTCCTAGTCAGGATGGGCCGCATCAGCATCTGCATCCTGGTCCTGTTGCAAACATTGAACCAATTAGGCAACCAGAGAATGCTGCAATCACTATGCCTCCAGCACATATGAGAGGTGATGAAATTAGCGGAGGAGACATGAATTATTTCGCTAAAGACGCATTCCAAAACGAGCTCGACAGGCCTATAGAACCTTTCTTTGGATCACCAATCAGTAACATGCCATTTGATTTCGGAGGCCTTAACAGTCCACCTTTCCATTTAGATGATTTCATAGGCGATGATGAAATGATTCAGTACTTTGGAGCCTAG 1956 0.4519 MAEIEEVGPDVCSDLDVDDIRDQNIPEKDVSDEDIEPEDLERRMWKDRIKLKRLKEKQKLEARQAAEKQKPRQSSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGSSDNIRAWWKEKVRFDRNGPAAIAKYEAECLAMIEADNNRNGNSQSMLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPTGNEDWWLHLNLPYGQGPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESSIWLGVLSREEALIRQPSSDNGTSGITEMPVGLPIENKQPATSSASNYDVENYDVDVTDDGVGSVSSKEDRSNQFMDAEPSDNLRRSSVKDTDQAQKPRKKRQRTRSKAANKLPARSDNEILNVEPISKVPNMNEREEAHVVGLLQIHGNEQVNGTDSVLRLPERGHEVPVQLAAPEFDHYSYMHANNVISSENMYMGGRPLHYPQLQNPPDMPHEDAYIFNTVGGGYGPSQDGPHQHLQPGPAANIEPGYGPSQAGPHQHLLPGPAANIEPGYGPSQDGPHQHLHPGPVANIEPIRQPENAAITMPPAHMRGDEISGGDMNYFAKDAFQNELDRPIEPFFGSPISNMPFDFGGLNSPPFHLDDFIGDDEMIQYFGA 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04500 651 MobiDBLite consensus disorder prediction 1 37 - -
Trre11g04500 651 MobiDBLite consensus disorder prediction 60 83 - -
Trre11g04500 651 MobiDBLite consensus disorder prediction 311 325 - -
Trre11g04500 651 MobiDBLite consensus disorder prediction 357 372 - -
Trre11g04500 651 Pfam Ethylene insensitive 3 38 285 IPR047091 GO:0003700
Trre11g04500 651 SUPERFAMILY DNA-binding domain of EIN3-like 166 289 IPR023278 GO:0003700|GO:0005634
Trre11g04500 651 MobiDBLite consensus disorder prediction 14 30 - -
Trre11g04500 651 Coils Coil 48 68 - -
Trre11g04500 651 Gene3D - 72 148 IPR023278 GO:0003700|GO:0005634
Trre11g04500 651 Gene3D - 158 296 IPR023278 GO:0003700|GO:0005634
Trre11g04500 651 MobiDBLite consensus disorder prediction 341 355 - -
Trre11g04500 651 MobiDBLite consensus disorder prediction 500 567 - -
Trre11g04500 651 MobiDBLite consensus disorder prediction 289 392 - -
Trre11g04500 651 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 18 428 IPR006957 GO:0003700|GO:0005634
Trre11g04500 651 FunFam Ethylene insensitive 3-like 1 159 295 - -
Trre11g04500 651 FunFam Ethylene insensitive 3-like 1 72 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04500 Trre-Chr11 57258245 57261125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04500 18 371 EIL Transcription Factor Family AT1G73730 69.859 1.34e-172 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF EIL Trre11g04500 EIN3 4.9e-127 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04500 11 57258245 57261125 Trre11g04500 11 57258245 57261125 ECH