Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04231 ATGGATCCTTCTTGTGGACAAACTCAGCAAATGTCAAGCCAATCATCAATGGAAAACATGTTAGGTTGCTCAAAAGAAGAACAAGAGAGAAAACCAAAACCTCAGCCAGAACATGCTTTGAATTGTCCAAGATGTAACTCAACCAACACCAAATTTTGTTACTACAACAATTATAGTCTTACTCAACCAAGATACTTTTGCAAATCTTGTAGAAGATATTGGACAAAAGGTGGAACATTGAGGAATGTTCCGGTTGGTGGTGGATGTCGAAAAAACAAAAGATCATCATCTTCATCTTCAAAGAGGGTTCAAGATCAAAACCAAACATTCACACCTAATCTTAACCCTTTTAATAATCTTCCTCTTTCATCTTATGATCATAATTCCAATGATTTTGCATTAGCATTTGCTAGGCTTCAAAAACAATCATGTGGACAAATGGGTTATGATGATAATGATCTATCAATTTTGGGTAATCCTCAAAATCATGGATTTATGGATGCAATTAGAAGTGGGTTATTTCTTGGAAATGGATTACATTATAATAATAATGTTCAAAATATGTATGGTGGGTATGGAAATGGAGGAGATAATGGTGAAGTAAATAGTTGCAACAACAACAATAACAATGGTTGTGGGGTTAGTGAAGAGATGATGTTTCCTTATGATCAAGAAATGAACAATTGCATTGCAACAACTAACATGAAGCAAGAACAAAGTGAAAGTAAAGTTTTTGGTGGTTTTCAATGGCAACTAAATGGAGGAACAAACATGGTTGAGCTTGAATCAACAAGAGCTAGTTGGAATAATGGTTTCACATCTCCTTGGCAAGGGCTTCTTCATAGTCCCCTAATGTAG 858 0.352 MDPSCGQTQQMSSQSSMENMLGCSKEEQERKPKPQPEHALNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSKRVQDQNQTFTPNLNPFNNLPLSSYDHNSNDFALAFARLQKQSCGQMGYDDNDLSILGNPQNHGFMDAIRSGLFLGNGLHYNNNVQNMYGGYGNGGDNGEVNSCNNNNNNGCGVSEEMMFPYDQEMNNCIATTNMKQEQSESKVFGGFQWQLNGGTNMVELESTRASWNNGFTSPWQGLLHSPLM 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04231 285 MobiDBLite consensus disorder prediction 85 116 - -
Trre11g04231 285 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Trre11g04231 285 MobiDBLite consensus disorder prediction 23 37 - -
Trre11g04231 285 MobiDBLite consensus disorder prediction 1 22 - -
Trre11g04231 285 MobiDBLite consensus disorder prediction 91 116 - -
Trre11g04231 285 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Trre11g04231 285 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 228 IPR045174 GO:0003700|GO:0006355
Trre11g04231 285 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Trre11g04231 285 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04231 Trre-Chr11 55004918 55006587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04231 38 285 C2C2-Dof Transcription Factor Family AT2G28510 46.183 3.42e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre11g04231 zf-Dof 3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04231 - - gmx:778106 294.278