Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02682 ATGATGATTAATGTTTCAACCATGAAGCTTTTTGGTAGAACCATTTTTCTAACACACAACCACATAGATGTCTCTTCCAATGATTCTTCCTTAGAATTTGCAACTCATCTTCCTTATGAAGATTTATCTGATCATAGTCTTCATTCATCTTTATCTTCATCTTCTCCACTTGAAGTGAATTCTCCAACAGAACATGTTGCAAAGAGATACAAGGAAACATCAAGAAAAGAACTAACCTCAATGCAAGATGATGATGCTTCATTCCCAACCACAGAGGATTCAAAATCTCCCACATCCTCAAGCCTTATTGAGAACCCGAAAACTCCTTCATCTGAAACAGAAACTTCTGAACTGAACTCCACTAAAATTGATGAACAAAGTGTTATGTCACAAGACAAATCTCCAAACAAACCAGACATAATTGTTCCATGTCCAAGATGTAAAAGCATGGACACAAAATTTTGTTACTACAACAACTACAACGTCAAACAGCCCCGACATTTCTGCAAAAACTGCCAGCGATATTGGACTGCTGGAGGAACCACGAGAAATTCTTCTATTATGTCTTCAACTTCACTTGAGAAGAAAATGAATGTTGGATCACATGAAGAAACATTTGATAAGAGTTCTCAAAGTTTATTTCCTCCACAGTTTCCATGGAACCCTACAATGTTTTATCCTGTGACATTGTATCCCAATATAGCATACTATGGTGGTTGTTTGCCACCATCTTGGAGTGTAAAATCTATCTCATCACAAACTTGTGCTCTAAGTAAACCAACTTTTGGAAAACACTCCAGAGATGGAGAAATTATCTTTCATTCCAACTCAGAAAATAACAAGATAGAAAGCAATAATAACAGTTTGTTGATCCCTAAGACACTAAGAGCAGGACTTTTCAAAGGGTTTGCAACTAAGGGTGATGAGAAGAATCATGTGGTTGAAGTATCCTCATCTGTATTGCAAGTTAACCCTGCAGCTTTATCAAGGTCTCTTGTCTTACATGAGAGGATTTGA 1017 0.3687 MMINVSTMKLFGRTIFLTHNHIDVSSNDSSLEFATHLPYEDLSDHSLHSSLSSSSPLEVNSPTEHVAKRYKETSRKELTSMQDDDASFPTTEDSKSPTSSSLIENPKTPSSETETSELNSTKIDEQSVMSQDKSPNKPDIIVPCPRCKSMDTKFCYYNNYNVKQPRHFCKNCQRYWTAGGTTRNSSIMSSTSLEKKMNVGSHEETFDKSSQSLFPPQFPWNPTMFYPVTLYPNIAYYGGCLPPSWSVKSISSQTCALSKPTFGKHSRDGEIIFHSNSENNKIESNNNSLLIPKTLRAGLFKGFATKGDEKNHVVEVSSSVLQVNPAALSRSLVLHERI 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02682 338 MobiDBLite consensus disorder prediction 64 82 - -
Trre10g02682 338 MobiDBLite consensus disorder prediction 45 61 - -
Trre10g02682 338 MobiDBLite consensus disorder prediction 83 134 - -
Trre10g02682 338 PANTHER CYCLIC DOF FACTOR 2 197 337 IPR045174 GO:0003700|GO:0006355
Trre10g02682 338 Pfam Dof domain, zinc finger 141 191 IPR003851 GO:0003677|GO:0006355
Trre10g02682 338 MobiDBLite consensus disorder prediction 44 138 - -
Trre10g02682 338 ProSitePatterns Zinc finger Dof-type signature. 144 180 IPR003851 GO:0003677|GO:0006355
Trre10g02682 338 ProSiteProfiles Zinc finger Dof-type profile. 142 196 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02682 Trre-Chr10 34958708 34960275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02682 110 338 C2C2-Dof Transcription Factor Family AT5G62430 34.228 7.57e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre10g02682 zf-Dof 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02682 - - psat:127119499 444.121