Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02679 ATGAAGCTTTTTGGCAGAACCATTTTTCTAACACACAACCACATGGATGTCTCTTCCAATGATTCTTCCTCAGAATTTGCAACTCATATTCCTTATGAAGATTTATCTGATCATAGTCTTCATTCATCTTTATCTTCATCTTCTCCACTTGAAGTGAATTCTCAAACTCAACATGATGCTAAGAGATATAAGGAAACATCAATGAAACAATTCACCTCAGTGCAAGTTGATGATGAGGTCTCACAACAAACCAAAGAGGATTTAAAATCTCCAACATCTTCAAGCCTTATTGAGAACCCGAAAACACCCTCGTCAGAAACCGAAACTTCTCAACTCAATTCCACTAAAATTGATGAACAAAGTGATATATCACAAGACAAATCTCCAAAGAAACCAGACCAAATTGTTCCATGTCCAAGATGCAAAAACATGGACACAAAATTTTGTTACTACAACAACTACAACGTCAAACAGCCGCGACATTTCTGCAAAAACTGCCAGAGATATTGGACTGCTGGAGGAACCACGAGAAACATGCTTGTAGGCGCAGGTCGGCGCAAGAACAAATTATCTTCTTCATTTTCTTCCGATGTCTCTCATTGTCGTCAAATGAATACTGTCTTGACCTTTGGATCAGATTCTTCAACTTCACTTGACAAGAAAATGAATGTTGAATCACATGAAGAAAAAACTGATAATAGTCATCAAAATTTTCCTCCACAGTTTCCATGGAACCCTGCAATGTCTTATCCTGTGACATTCTATCCCAATATAGCATATTATGGTGGTTGTTTGGTACCATCTTGGAGTGTACAACCTATCTCACCACAATCTTGTGATCCAACTTTAGGGAAACATTCTAGAGATGGAAAGATTTTCTCTCATTCCAACTCAGAGAAAGAAAAACTTTGCTCAGAAAATAACAAGATAGAAAGTAATAATACTAGTGAGTTGATCCCTAAGACACTGAGACGAAAACTTTTCAAGGGATTTGCATCTAAGGGTGTTGAGAATAATCAAGTGGTTGAAGTATCATCATCAGTAATGAAAGCTAACCCTGCAGCTTTATCAAGGTCTCTTGTGTTCCATGAGAGGATTTGA 1101 0.3742 MKLFGRTIFLTHNHMDVSSNDSSSEFATHIPYEDLSDHSLHSSLSSSSPLEVNSQTQHDAKRYKETSMKQFTSVQVDDEVSQQTKEDLKSPTSSSLIENPKTPSSETETSQLNSTKIDEQSDISQDKSPKKPDQIVPCPRCKNMDTKFCYYNNYNVKQPRHFCKNCQRYWTAGGTTRNMLVGAGRRKNKLSSSFSSDVSHCRQMNTVLTFGSDSSTSLDKKMNVESHEEKTDNSHQNFPPQFPWNPAMSYPVTFYPNIAYYGGCLVPSWSVQPISPQSCDPTLGKHSRDGKIFSHSNSEKEKLCSENNKIESNNTSELIPKTLRRKLFKGFASKGVENNQVVEVSSSVMKANPAALSRSLVFHERI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02679 366 MobiDBLite consensus disorder prediction 38 56 - -
Trre10g02679 366 MobiDBLite consensus disorder prediction 86 119 - -
Trre10g02679 366 PANTHER CYCLIC DOF FACTOR 2 1 365 IPR045174 GO:0003700|GO:0006355
Trre10g02679 366 MobiDBLite consensus disorder prediction 38 137 - -
Trre10g02679 366 ProSitePatterns Zinc finger Dof-type signature. 138 174 IPR003851 GO:0003677|GO:0006355
Trre10g02679 366 ProSiteProfiles Zinc finger Dof-type profile. 136 190 IPR003851 GO:0003677|GO:0006355
Trre10g02679 366 Pfam Dof domain, zinc finger 133 189 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02679 Trre-Chr10 34939791 34941693 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02679 104 366 C2C2-Dof Transcription Factor Family AT5G62430 39.799 1.07e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre10g02679 zf-Dof 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02679 - - psat:127119499 508.064