Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01900 ATGTCACCTGATGAAACAAAAACCTCAAAATCTCCAAAAGAAAACAACATCAACCAACAAGGTTCTTCTGTTGGTGGTAGAAAAACATCTTCATCATCTTCAACTTCAACAACAAAACCACCACATGAACAAAACATGAAGTGTCCAAGATGTGATTCACCAAACACAAAATTCTGCTACTACAACAACTACAGTTTAACACAACCAAGACATTTCTGCAAAACATGTAGAAGATATTGGACAAAAGGTGGAGCTTTACGCAACGTTCCGATCGGTGGTGGATGTAGAAAAAACAAGAAAATGAAATCATCATCATCATCAAGACTTTCTTGTGATAATTCAAAAGATTCTGCTTCTTCTTCTGACCTTGTTGGTGGTTTAAAATTTCTTCATTCTCTTTCTTCTCCTTCCATGGATTTTCATCTTGGTACTGGTTGTTTACCTTTTCCAAGGCTTCAACTTCAACAAAATCATCATAATCTTTCTCCAATATTTAACCATTTTTCATCTTTTGGAGAAACTTCTTCTGCTATGAATCATAATAATAATTACCCTGCTTCTTCAAATTCTGTTGCTGCTTCTGCTATGAATTTTCCATTTTCAGTTGGTGGTGGTAATAATAATTTTAATGGTGCAATTCAAGGTATGAGTTCAATGAATATTCATAGTAACGTTGCTTCTTCTATTGAATCATTGAGTTCTATGAACCAAGACTTGCACTGGAAGCTACAGCAACAGAGATTATCTATGCTGTTTGGTGGTGGAGAAAATCAGCAGAAGGAAAATAATCAGACAGAGAAACCATTGCAGCCTATTTTGTTTCAAAATCTTGAGGTTACAAAGCAGCAAGATGGTGGCAATTTTTCTGTTGGAAATTCAAGAAGAGAAAGTATAAATGGTGGAGATACACCAACTGAGTGGTTTTTTGGTAACTCTTATGGTTCTGTTGCTGCGACACCAACTGCTAGTAGTGGTGGTGGTGGCGGCGGTGGTGGTGGTGGACATGATAGTGGAAGCAACTGGAATGGTGGTGGTGGTGGTGGTGTTCATGGTTGGAATGATGTGCAGCAGCAATATAGTGCTTTGCCCTAG 1092 0.3782 MSPDETKTSKSPKENNINQQGSSVGGRKTSSSSSTSTTKPPHEQNMKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKMKSSSSSRLSCDNSKDSASSSDLVGGLKFLHSLSSPSMDFHLGTGCLPFPRLQLQQNHHNLSPIFNHFSSFGETSSAMNHNNNYPASSNSVAASAMNFPFSVGGGNNNFNGAIQGMSSMNIHSNVASSIESLSSMNQDLHWKLQQQRLSMLFGGGENQQKENNQTEKPLQPILFQNLEVTKQQDGGNFSVGNSRRESINGGDTPTEWFFGNSYGSVAATPTASSGGGGGGGGGGHDSGSNWNGGGGGGVHGWNDVQQQYSALP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01900 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 252 IPR045174 GO:0003700|GO:0006355
Trre10g01900 363 MobiDBLite consensus disorder prediction 320 363 - -
Trre10g01900 363 MobiDBLite consensus disorder prediction 96 119 - -
Trre10g01900 363 MobiDBLite consensus disorder prediction 1 48 - -
Trre10g01900 363 Pfam Dof domain, zinc finger 44 100 IPR003851 GO:0003677|GO:0006355
Trre10g01900 363 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Trre10g01900 363 MobiDBLite consensus disorder prediction 104 119 - -
Trre10g01900 363 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Trre10g01900 363 MobiDBLite consensus disorder prediction 12 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01900 Trre-Chr10 17983622 17984713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01900 32 363 C2C2-Dof Transcription Factor Family AT5G65590 40.643 2.88e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre10g01900 zf-Dof 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01900 - - gmx:100780729 356.295