Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme89362g00001 ATGGCAGATAGGGCTAGGATGGCCAACATACCTATGCAAGAACCATCACAAAAATGTCCAAGGTGTGATTCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCACAGCCGCGCCACTTTTGCAAGACCTGTAGAAGGTACTGGACAAGGGGCGGCGCTCTAAGAAGCGTCCCAGTTGGAGGTGGCTGCCGAAGGAACAAGAGGACTAAATCAAGCAACAACAACACCTCAAAGTCTCCAGTTAGCTCGGATCGCCAAACTAGTTCTGCAAACAACTCTCCCGCGGTACTCAGTTCCCCGACTCCACCACCGATGAGATTCATGGCTCCTTTGCATCAACTCGGG 354 0.5085 MADRARMANIPMQEPSQKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRTKSSNNNTSKSPVSSDRQTSSANNSPAVLSSPTPPPMRFMAPLHQLG 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme89362g00001 118 MobiDBLite consensus disorder prediction 1 21 - -
Trme89362g00001 118 ProSiteProfiles Zinc finger Dof-type profile. 17 71 IPR003851 GO:0003677|GO:0006355
Trme89362g00001 118 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 101 IPR045174 GO:0003700|GO:0006355
Trme89362g00001 118 MobiDBLite consensus disorder prediction 61 118 - -
Trme89362g00001 118 MobiDBLite consensus disorder prediction 69 99 - -
Trme89362g00001 118 ProSitePatterns Zinc finger Dof-type signature. 19 55 IPR003851 GO:0003677|GO:0006355
Trme89362g00001 118 Pfam Dof domain, zinc finger 16 71 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme89362g00001 Trme-Chr89362 1 354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme89362g00001 1 71 C2C2-Dof Transcription Factor Family AT5G02460 87.324 8.51e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trme89362g00001 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme89362g00001 - - vvo:131637446 221.861