Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4488g00001 AATGGACTTGAAGAAGAATCAACTACTGCTGATGTTGTTGTTCCTTTGAATGATGTTTCTATCAAACAAGCTAATCCTCAAGAACATGCTAATGCTTTTCCAAACATGTACGAAACTGGCACTTCGAAACCGGTGACCAAAGCAGTTCATAGAACTAATGAACACAGGACTGCCAAACGAGATACTGACAATCAAGAGAAAGTTTTCAAGAAGCCAGACAAGGTTCTTCCGTGTCCTCGGTGCAATAGTTTGGAGACAAAGTTTTGCTATTTCAACAATTACAATGTTAACCAACCAAGACATTTCTGCAAAAAATGTCAGAGGTATTGGACAGCTGGGGGAGCAATTAGGAATGTTCCTATCGGAGCCGGTAAGCGTAGAAATAAGCATTCACCTTTGCAGAACTGTGAAGTTCCTGTTACCCTTGATGTTGTACCTGTCATACACACAGATTCCAACCCTGCTAGTCTCAGTGAGGAAGTTCCTCTTAGTGAATCACTAGAAGTGTTAAATCTTAAGGGCCATCGAAAAATTGAAATCGACTTGTCTACTGTCAAAGAGGATACTGACGAACCTTCTCGCTCTTCTGTGAAAGCTGCCGAATCCGGCGAAATGGAGTATTCAGAAAACGGAATAGAGCATGTTGGTTTGACAACACAATACAATGGCTTAATTCCTTTACACGCACTTCATTATTATTCTGCTCCTCCATGGCAATGGAATCCATGTTGGAATCCTACGGCATTTAAGCCTGAAAACATAACTTCAAGTCCTGCAACCATGATGGCAGTAGAAATACCAATGGCACCTTCATCATATTGGGGTTGTATGCCAAATTGGGTTGGCCAAATGGAAGAATTTAACGGCATTCCATCGCCTTCTTCTTCGGTTAGCAGCGGCAATTGTTCCGGTAATAGGTCACCAACTTTAGGAAAACATCGTAGAGATGGAAGTACACAAGAAGAAGATACAATGAAGCCGAATATTTGGGTGCCTAAAACTATCAGAATTAACGATCCAGAAGAGGCTGCTAAGAGTTCGATATGGTCAACTTTAGCAACAAAATCTAAACAGAACAAACCTGTTATGAAAGGAAGTGTTTTTAAATCATTTGAACCTAAGTCAAATGCAAGTTCTCGTGATTTAGACGATAATCAAATTCTAAGAGCAAACCCTGCTGCTTTCTCTCGCTCGGGATCTTTTCAGGAAAGCAT 1214 0.4077 NGLEEESTTADVVVPLNDVSIKQANPQEHANAFPNMYETGTSKPVTKAVHRTNEHRTAKRDTDNQEKVFKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKKCQRYWTAGGAIRNVPIGAGKRRNKHSPLQNCEVPVTLDVVPVIHTDSNPASLSEEVPLSESLEVLNLKGHRKIEIDLSTVKEDTDEPSRSSVKAAESGEMEYSENGIEHVGLTTQYNGLIPLHALHYYSAPPWQWNPCWNPTAFKPENITSSPATMMAVEIPMAPSSYWGCMPNWVGQMEEFNGIPSPSSSVSSGNCSGNRSPTLGKHRRDGSTQEEDTMKPNIWVPKTIRINDPEEAAKSSIWSTLATKSKQNKPVMKGSVFKSFEPKSNASSRDLDDNQILRANPAAFSRSGSFQES 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4488g00001 404 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Trme4488g00001 404 MobiDBLite consensus disorder prediction 291 308 - -
Trme4488g00001 404 MobiDBLite consensus disorder prediction 32 47 - -
Trme4488g00001 404 MobiDBLite consensus disorder prediction 355 404 - -
Trme4488g00001 404 PANTHER CYCLIC DOF FACTOR 2 22 404 IPR045174 GO:0003700|GO:0006355
Trme4488g00001 404 MobiDBLite consensus disorder prediction 291 328 - -
Trme4488g00001 404 MobiDBLite consensus disorder prediction 371 404 - -
Trme4488g00001 404 MobiDBLite consensus disorder prediction 48 64 - -
Trme4488g00001 404 MobiDBLite consensus disorder prediction 32 64 - -
Trme4488g00001 404 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Trme4488g00001 404 Pfam Dof domain, zinc finger 73 130 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4488g00001 Trme-Chr4488 89 1302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4488g00001 41 404 C2C2-Dof Transcription Factor Family AT5G39660 38.303 2.21e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trme4488g00001 zf-Dof 2.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4488g00001 - - cam:101489693 568.155