Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme41907g00001 GATCCTGATAATATAACTGCTGGTGATACGCTTTGGATTCCTTTGCCTTGTAGTTGTGATATGGTGGATGGGAACAGTGTGATGCATTATGCACATATTGTTGAATCTGGAAGTAGTATTGAAGCTATTGCTCAAGAATATGGTACTACTCAACAGAGTTTACTCACAATTAATGGTATTAAAGATCCTAAATCACTTCTAGCCGGTCAGCTTCTTGATGTTCCTCTTCCAGGTTCATCCGATATAAGCTACCTTATTAGGAAGCACACACAGGTCAAAGAAGCCGCACTCGCCGCAGGAGGTTATCCGCTATTTTTTGTCAAATAG 327 0.4067 DPDNITAGDTLWIPLPCSCDMVDGNSVMHYAHIVESGSSIEAIAQEYGTTQQSLLTINGIKDPKSLLAGQLLDVPLPGSSDISYLIRKHTQVKEAALAAGGYPLFFVK 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme41907g00001 108 CDD LysM 32 74 IPR018392 -
Trme41907g00001 108 Gene3D LysM domain 23 83 IPR036779 -
Trme41907g00001 108 Pfam LysM domain 32 75 IPR018392 -
Trme41907g00001 108 ProSiteProfiles LysM domain profile. 30 74 IPR018392 -
Trme41907g00001 108 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 4 77 - -
Trme41907g00001 108 SUPERFAMILY LysM domain 30 76 IPR036779 -
Trme41907g00001 108 SMART LysM_2 31 75 IPR018392 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme41907g00001 1 80 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 50.000 8.28e-22 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme41907g00001 - - cam:101506878 130.954