Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25254g00001 ATGACTGACAAGGCAAGGACGGCAAACATGCCTATGCCAGAAGCACCACTGAAATGTCCACATTGTGAATCGACCAACACAAAATTTGTCTACTTCAACAACTACGATCTCAGTCAGCCAAGACACTTCTGCAAGACTTGCAGATGGTACTGGACGAGAGGGGAAGCTTTAAGGAATGTCCCAGTTGGCGGAGCTTTAAGCAAAAGTAGCAACAATGGTAACTCAATAAAGTCTCCGGCCATATTATCTAATACTGTTGCTGATCCAACCATGAAGAGGTACGATGTGTACCTAAGTTTCTGTGAGGAAGACTCACTTTCTTTTGTTGTGGGTATATCTACAACGCTTACTTCACAACATGGACTTGTTGTTTTCTTGGACACCCAAAGATTTGAAAGTGATGATGATGATCAGAGACTAAGACACTCAGAGTCAACACTGAATGTTATAGGAGACTGCAAAATTGTTATAATTGTGTTATCAAAGAATTATACTAATTCAAGAGGGTGTCTTGATGAATTGGAGAAAATAACCGAGTGTTGCCGAACATCAGATGATCTCACTGTTGTGCCTGTTTTCTATGATGGTGTCTATTCCCCCAACACAAGATTGCAGGGAGATATGTATGGAGAGGCTTTTCCTGATTTTCTCGATAGAATCTCAATGGAGGAAACGTCCGAAAAGGAAGATAAGTTTATGAGTTGGGTGGCAGCAATCAGCTATAATAAAGCTTACATATATTCAGGATCAGCATATTTCGGAAACGCACTCATACACGGGTAA 783 0.4087 MTDKARTANMPMPEAPLKCPHCESTNTKFVYFNNYDLSQPRHFCKTCRWYWTRGEALRNVPVGGALSKSSNNGNSIKSPAILSNTVADPTMKRYDVYLSFCEEDSLSFVVGISTTLTSQHGLVVFLDTQRFESDDDDQRLRHSESTLNVIGDCKIVIIVLSKNYTNSRGCLDELEKITECCRTSDDLTVVPVFYDGVYSPNTRLQGDMYGEAFPDFLDRISMEETSEKEDKFMSWVAAISYNKAYIYSGSAYFGNALIHG 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25254g00001 260 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 79 IPR045174 GO:0003700|GO:0006355
Trme25254g00001 260 Pfam Dof domain, zinc finger 16 70 IPR003851 GO:0003677|GO:0006355
Trme25254g00001 260 Pfam TIR domain 94 213 IPR000157 GO:0007165
Trme25254g00001 260 SMART till_3 93 242 IPR000157 GO:0007165
Trme25254g00001 260 ProSiteProfiles TIR domain profile. 92 224 IPR000157 GO:0007165
Trme25254g00001 260 ProSiteProfiles Zinc finger Dof-type profile. 17 71 IPR003851 GO:0003677|GO:0006355
Trme25254g00001 260 Gene3D - 89 249 IPR035897 -
Trme25254g00001 260 SUPERFAMILY Toll/Interleukin receptor TIR domain 92 236 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25254g00001 Trme-Chr25254 19 801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25254g00001 1 65 C2C2-Dof Transcription Factor Family AT2G37590 78.462 7.74e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trme25254g00001 TIR 9.6e-17 CL0173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25254g00001 - - mtr:112421079 177.563