Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme247169g00001 ATGGCTGAAGAAGTTAGAAAAGATGAAGAGAATATTAATAATCAAGGGATTAAGCTATTTGGCACAACAATAAAACTACATGATAAGGAATCAAAAGAAGGAGAAAAAGAAAGCGAAGATCGAACGGTGGAGAAGGGATCAGAAAAGATCATACCGTGTCCAAGATGCAAAAGCATGGAAACTAAATTCTGTTATTTCAACAACTACAACGTTAATCAACCAAGACATTTTTGTAAGAGCTGTCAGAGGTATTGGACAGCTGGTGGGGCCCTCCGTAACGTACCGATTGGAGCCGGTCGTCGGAAGGCCAAGCC 314 0.4108 MAEEVRKDEENINNQGIKLFGTTIKLHDKESKEGEKESEDRTVEKGSEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVPIGAGRRKAKP 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme247169g00001 105 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677|GO:0006355
Trme247169g00001 105 PANTHER CYCLIC DOF FACTOR 2 31 104 IPR045174 GO:0003700|GO:0006355
Trme247169g00001 105 MobiDBLite consensus disorder prediction 25 46 - -
Trme247169g00001 105 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677|GO:0006355
Trme247169g00001 105 Pfam Dof domain, zinc finger 49 104 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme247169g00001 Trme-Chr247169 1 314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme247169g00001 13 105 C2C2-Dof Transcription Factor Family AT1G29160 62.500 7.99e-45 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trme247169g00001 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme247169g00001 - - cave:132172385 159.458