Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme167125g00001 CAGCAGCAGCTTCAACTGCTTCCACATCATCTGCAGCAGAGGTCAATGGCACCTAAGCAGAAAATGGGGAACCCTGGAAGTGGTGACGGCGAAGATGTGTCGACTCATCAGTTTCAGCAGGCTATAATTGATCAGCTTTTCAAAGCTGCAGAACTTATAGACGCCGGTAATCCGGAACTCGCGCACGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTATTGGGAAGCCTTTTCAAAGGGCTGCTTTCTATTTCAAGGAGGCATTATTGCAATTGCTTCAATCAAATGTCAATAATGGTAACAACAACARTAACTTTTCACCAACCGGCCTCTTGCTCAAGATTGGTGCTTATAAATCATTCTCAGAAATCTCACCGGTTCTGCAGTTTGCCAATTTCACTTCCAACCAAGCATTGCTTGAAGCTGTAGAAGGTTACGATCGAATTCACATAATAGATTTCGATATTGGTTTTGGTGGACAATGGTCTTCTTTTATGCAGG 505 0.4396 QQQLQLLPHHLQQRSMAPKQKMGNPGSGDGEDVSTHQFQQAIIDQLFKAAELIDAGNPELAHGILARLNHQISPIGKPFQRAAFYFKEALLQLLQSNVNNGNNNXNFSPTGLLLKIGAYKSFSEISPVLQFANFTSNQALLEAVEGYDRIHIIDFDIGFGGQWSSFMQ 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme167125g00001 168 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 44 168 IPR005202 -
Trme167125g00001 168 ProSiteProfiles GRAS family profile. 33 168 IPR005202 -
Trme167125g00001 168 MobiDBLite consensus disorder prediction 1 33 - -
Trme167125g00001 168 Pfam GRAS domain family 43 168 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme167125g00001 Trme-Chr167125 1 505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme167125g00001 42 168 GRAS Transcription Factor Family AT4G00150 64.062 2.32e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme167125g00001 GRAS 5.7e-37 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme167125g00001 - - gmx:100792973 238.81