Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trme15333g00001 | ATGGAAGAGGAACTGAGCAAGTGTAAGAAGGAAAAAGATGAAACTCTCGCCCAATCGTCACAAAAGAACACTGATCTAGACACTGCATCAAGATTAGTGGAAGAATCTATTAACCCCTCCACCGAGGAGGAGCAAAAGTCTAATGAAGAACAGGCTGAGAATGCACAGGATAAGACCTTGAAAAAGCCAGACAAAATACTTCCTTGCCCCCGATGTCATAGCATGGATACCAAGTTCTGTTACTACAATAATTACAATGTCAACCAGCCACGTCATTTCTGCAAGAACTGCCAGAGATACTGGACTGCCGGTGGGGCCATGAGAAACGTTCCTGTAGGCGCCGGTCGTAGGAAGAACAAGAATTCTAGTTCTCACTACCGCCAGATAACTGTCCCTGATGCAGCAGCCGTTCAGAATTCTCAATCTGACTCTCCTAATGGAATTCATCCTCCTCCTCTGAACTGTAACGGCACGGTCTTTACGTTCGGGACCGATTCACCCTTGTGTGAATCAATGGAATCTGCATTGAACATTGTTGATAAAGGAGTTAATAATTGCACGAATAATGGATTCATTAGACCGGAAAATCTAAGAATTCATGTTCCCTATGCTGGTGAAGAAAATAGCAATGAATCTCCTGACGCATCGACAATGCCAGCGGAAGATGCAACTGTCAACAATTCTCTAGAACAAGCTATGCCGAATTGTCAAAACTTCCCACCTCAAGTTCCGTACTACCCGGGTGCCCCTTGGCTTTTACCGTGGAATCCATCCCAATGGAGCTCTCAAGTACAACCACCACCTGCTTTTTTCCCACAAGGATTTGCCATGCCAGTCTATCCTCCACCGGCTTATTGGGGTTTTACTGTGCC | 872 | 0.4553 | MEEELSKCKKEKDETLAQSSQKNTDLDTASRLVEESINPSTEEEQKSNEEQAENAQDKTLKKPDKILPCPRCHSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNSSSHYRQITVPDAAAVQNSQSDSPNGIHPPPLNCNGTVFTFGTDSPLCESMESALNIVDKGVNNCTNNGFIRPENLRIHVPYAGEENSNESPDASTMPAEDATVNNSLEQAMPNCQNFPPQVPYYPGAPWLLPWNPSQWSSQVQPPPAFFPQGFAMPVYPPPAYWGFTVP | 291 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trme15333g00001 | 291 | PANTHER | CYCLIC DOF FACTOR 2 | 7 | 290 | IPR045174 | GO:0003700|GO:0006355 | |
Trme15333g00001 | 291 | Pfam | Dof domain, zinc finger | 64 | 121 | IPR003851 | GO:0003677|GO:0006355 | |
Trme15333g00001 | 291 | MobiDBLite | consensus disorder prediction | 37 | 67 | - | - | |
Trme15333g00001 | 291 | MobiDBLite | consensus disorder prediction | 19 | 36 | - | - | |
Trme15333g00001 | 291 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Trme15333g00001 | 291 | ProSitePatterns | Zinc finger Dof-type signature. | 69 | 105 | IPR003851 | GO:0003677|GO:0006355 | |
Trme15333g00001 | 291 | Coils | Coil | 38 | 58 | - | - | |
Trme15333g00001 | 291 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
Trme15333g00001 | 291 | ProSiteProfiles | Zinc finger Dof-type profile. | 67 | 121 | IPR003851 | GO:0003677|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trme15333g00001 | Trme-Chr15333 | 1 | 872 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trme15333g00001 | 9 | 286 | C2C2-Dof Transcription Factor Family | AT5G39660 | 43.599 | 1.33e-62 | 202 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Trme15333g00001 | zf-Dof | 2e-32 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trme15333g00001 | - | - | mtr:11414470 | 459.529 |