Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11117g00001 ATGAAAGAACTAACCTCGATGCAAGATGATGAGGCTTCATTCCAAACTACAGAGGATTCAAATTCTCCCACATCCTCAAGCCTTGTTGAGAACCCGAAAACTCCTTTATCTGAAACAGAAACTTCTGAACTGAATTCCAATAAAATTGATGAACAAAGTGATATGTCACAAGACAAATCTCCAAACAAACCAGACATAATTGTTCCATGTCCTAGATGCAAAAGCATGGACACAAAATTTTGTTACTACAACAACTATAACGTCAAACAGCCGCGACACTTCTGCAAAAACTGCCAGAGATACTGGACTGCTGGAGGAACCACGAGAAGTATGCTTATAGGCGCAGGCCGTCGCAAGAACAAAATCNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNATGAATGTTGGATCACATGAAGGAACATCTGATAAGAGTTCTCAGAGTGTTTTTCCTCCGCAGTTTCCATGGAACCCTGCAATGTTTTATCCTGTGACATTCTATCCCAATATAGCATATTATGGTGGTTGTTTGCCACCATCTTGGAGTGTACAATCTATGTCACCACAATCTTCTGGTCCAAGTAAACCTACTTTAGGGAAACACTCAAGAGATGGAGAGATTATATTTCATTCCAACTCAAAGAAAGAAAAACTTGGCTCAGAAAATAACAAGATTGAAAGTAATATTAATAGTGTGTTGATCCCTAAGACACTAAGAACAGGACTTTTCAAAGGATTTGCATCTAAGGGTGATGAGAAGAGTTATGTGGTTGAAGCATCCTCATCAATATTGCAAGCTAACCCTGCAGCTTTATCAAGGTCTCTTGTGTTCCATGAGAGAATTTGA 885 0.3616 MKELTSMQDDEASFQTTEDSNSPTSSSLVENPKTPLSETETSELNSNKIDEQSDMSQDKSPNKPDIIVPCPRCKSMDTKFCYYNNYNVKQPRHFCKNCQRYWTAGGTTRSMLIGAGRRKNKIXXXXXXXXXXXXXXXXXXXXXXXMNVGSHEGTSDKSSQSVFPPQFPWNPAMFYPVTFYPNIAYYGGCLPPSWSVQSMSPQSSGPSKPTLGKHSRDGEIIFHSNSKKEKLGSENNKIESNINSVLIPKTLRTGLFKGFASKGDEKSYVVEASSSILQANPAALSRSLVFHERI 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11117g00001 294 MobiDBLite consensus disorder prediction 1 68 - -
Trme11117g00001 294 ProSiteProfiles Zinc finger Dof-type profile. 68 122 IPR003851 GO:0003677|GO:0006355
Trme11117g00001 294 Coils Coil 122 122 - -
Trme11117g00001 294 ProSitePatterns Zinc finger Dof-type signature. 70 106 IPR003851 GO:0003677|GO:0006355
Trme11117g00001 294 PANTHER CYCLIC DOF FACTOR 2 10 293 IPR045174 GO:0003700|GO:0006355
Trme11117g00001 294 Pfam Dof domain, zinc finger 67 121 IPR003851 GO:0003677|GO:0006355
Trme11117g00001 294 MobiDBLite consensus disorder prediction 8 43 - -
Trme11117g00001 294 MobiDBLite consensus disorder prediction 44 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11117g00001 Trme-Chr11117 662 1546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11117g00001 40 294 C2C2-Dof Transcription Factor Family AT5G62430 37.748 2.43e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trme11117g00001 zf-Dof 6.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11117g00001 - - psat:127119499 381.333