Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10119g00001 ATGGAAGAGGAACTGAGCAAGTGTAAGAAGGAAAAAGATGAAACTCTCGCCCAATCGTCACAAAAGAACACTGATCTAGACACTGCATCAAGATTAGTGGAAGAATCTATTAACCCCTCCACCGAGGAGGAGCAAAAGTCTAATGAAGAACAGGCTGAGAATGCACAGGATAAGACCTTGAAAAAGCCAGACAAAATACTTCCTTGCCCCCGATGTCATAGCATGGATACCAAGTTCTGTTACTACAATAATTACAATGTCAACCAGCCACGTCATTTCTGCAAGAACTGCCAGAGATACTGGACTGCCGGTGGGGCCATGAGAAACGTTCCTGTAGGCGCCGGTCGTAGGAAGAACAAGAATTCTAGTTCTCACTACCGCCAGATAACTGTCCCTGATGCAGCAGCCGTTCAGAATTCTCAATCTGACTCTCCTAATGGAATTCATCCTCCTCCTCTGAACTGTAACGGCACGGTCTTTACGTTCGGGACCGATTCACCCTTGTGTGAATCAATGGAATCTGCATTGAACATTGTTGATAAAGGAGTTAATAATTGCACGAATAATGGATTCATTAGACCGGAAAATCTAAGAATTCATGTTCCCTATGCTGGTGAAGAAAATAGCAATGAATCTCCTGACGCATCGACAATGCCAGCGGAAGATGCAACTGTCAACAATTCTCTAGAACAAGCTATGCCGAATTGTCAAAACTTCCCACCTCAAGTTCCGTACTACCCGGGTGCCCCTTGGCTTTTACCGTGGAATCCATCCCAATGGAGCTCTCAAGTACAACCACCACCTGCTTTTTTCCCACAAGGATTTGCCATGCCAGTCTATCCTCCACCGGCTTATTGGGGTTTTACTGTGCC 872 0.4553 MEEELSKCKKEKDETLAQSSQKNTDLDTASRLVEESINPSTEEEQKSNEEQAENAQDKTLKKPDKILPCPRCHSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNSSSHYRQITVPDAAAVQNSQSDSPNGIHPPPLNCNGTVFTFGTDSPLCESMESALNIVDKGVNNCTNNGFIRPENLRIHVPYAGEENSNESPDASTMPAEDATVNNSLEQAMPNCQNFPPQVPYYPGAPWLLPWNPSQWSSQVQPPPAFFPQGFAMPVYPPPAYWGFTVP 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10119g00001 291 PANTHER CYCLIC DOF FACTOR 2 7 290 IPR045174 GO:0003700|GO:0006355
Trme10119g00001 291 Pfam Dof domain, zinc finger 64 121 IPR003851 GO:0003677|GO:0006355
Trme10119g00001 291 MobiDBLite consensus disorder prediction 37 67 - -
Trme10119g00001 291 MobiDBLite consensus disorder prediction 19 36 - -
Trme10119g00001 291 MobiDBLite consensus disorder prediction 1 18 - -
Trme10119g00001 291 ProSitePatterns Zinc finger Dof-type signature. 69 105 IPR003851 GO:0003677|GO:0006355
Trme10119g00001 291 Coils Coil 38 58 - -
Trme10119g00001 291 MobiDBLite consensus disorder prediction 1 67 - -
Trme10119g00001 291 ProSiteProfiles Zinc finger Dof-type profile. 67 121 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10119g00001 Trme-Chr10119 1 872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10119g00001 9 286 C2C2-Dof Transcription Factor Family AT5G39660 43.599 1.33e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trme10119g00001 zf-Dof 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10119g00001 - - mtr:11414470 459.529