Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4260 ATGGATCATAATAAACAAAGTGTCCAACCATCTTCTACAATCAAAGTGGAAAGAAAGATTGTTGAGAAAAATAGGAGAAATCAGATGAAAATTCTCTTTTCCAAACTCAACTCTCTTCTCCCTTATAATCCCAAGGAAGTGGTACCATTAATTGATCAAGTAGATGAGACTATAAACTACATAAAGAGTTTAGAGACAAATGTGAAGTTGGCAAAGGAGAAAAAAGAAAGTTTATTGAGAAATAAGAGATCACGTAGTGGCTGCTCGAGTTCTTCTTGTGGAGCAAAAGGAAGCATAAAATCACCAAAAATTGAGATTCATGAAATGGGTTTCTCTTTACAAATCATTGTGACATGTGGGGTTGATGATCAATTCATTTTCTATGAAATTATTCGAATACTCAATGAAGAGAATGTCGAGGTCATTTCTGCAAATTCTTCCTTGACCGGAGATTCATTTTTTCATATTGTGCATGCTGAGATTCCGCAATCTTTATTTCAATTTGGAGGGACCAAAGTAAGTGATAGATTGAAAAGTTTTGTGAACGGATTTGTGAGTGAGGTGCAAATAGATCCTCATTTGTTGGATTTTGAAATTGGAACTGAGAATTGGGAGCTACTACATTCTATAGTAAACAAGAACAATTAA 648 0.3426 MDHNKQSVQPSSTIKVERKIVEKNRRNQMKILFSKLNSLLPYNPKEVVPLIDQVDETINYIKSLETNVKLAKEKKESLLRNKRSRSGCSSSSCGAKGSIKSPKIEIHEMGFSLQIIVTCGVDDQFIFYEIIRILNEENVEVISANSSLTGDSFFHIVHAEIPQSLFQFGGTKVSDRLKSFVNGFVSEVQIDPHLLDFEIGTENWELLHSIVNKNN* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4260 215 Coils Coil 61 81 - -
Tpr7g4260 215 Pfam Helix-loop-helix DNA-binding domain 16 65 IPR011598 GO:0046983
Tpr7g4260 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 64 IPR011598 GO:0046983
Tpr7g4260 215 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 10 188 - -
Tpr7g4260 215 Gene3D - 14 90 IPR036638 GO:0046983
Tpr7g4260 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 81 IPR036638 GO:0046983
Tpr7g4260 215 SMART finulus 19 70 IPR011598 GO:0046983
Tpr7g4260 215 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 188 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4260 Tpr-Chr7 51552700 51553860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4260 16 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.983 4.77e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr7g4260 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4260 - - mtr:MTR_2g090425 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4260 7 51552700 51553860 Tpr7g4260 7 51552700 51553860 PCT