Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4089 ATGGACAATAGAGATATTTCAAATGGTTTCCTTCATGAAAACACAACAAGTTCATCAAATGAAAATCCTCCTATTTTAAAGAGGAAAAGAAACCTCCCTGGAAATCCAGATCCTGAAGCAGAAGTGATATCTTTATCACCAAAAACATTGATGGCAACAAATAGATTCGTGTGCGAAATTTGTCTAAAAGGTTTTCAAAGGGACCAAAATCTTCAACTTCATCGACGCGGACATAACCTTCCTTGGAAGCTGAAACAAAGAACAAGCAAAGAAATAAGGAAGAGAGTGTATGTTTGTCCAGAAAAGACTTGTGTTCACAATCATCCTTCAAGAGCTTTGGGAGACTTAACTGGGATAAAGAAGCACTTTTGTAGGAAGCACGGTGAGAAAAAGTGGAAGTGTGAGAAGTGCTCAAAGTTTTATGCTGTTCAATCAGATATGAAAGCACATTCAAAAACTTGTGGTACCAGAGAATACAAATGTGACTGTGGCACTATATTTTCGAGGAGGGATAGCTTTGTGACTCATAGGGCTTTCTGTGATGCCTTAGCAGAAGAAACAGCAAGAATAAACGGATCAACCAACTCATTATTAGGAATGGGAGGTAACAACATTGCTAATTACAACATCATGCAAAATTCTCTTATCCCAAACATAGGAGGAACTCATTTTTCCTCAATTTTCAAACCAAATTCATGCACAAATCAAGAAACAACAAATCAAACATCAAGATCAGGTTTATCCCTTTGGATGTCTCAAACATCTCATGACACAATATTGGCTAATAACAACAATTTGCATGAAACTTATCATCAAAATTGGGTGTTTGGAAATAAATTCTCTTCTAACAATGAATCTCAAGAGTTAACTAGTTCTGTTTCACTTCCACTTGTCAATAACAACAACATTGATAAGGATAGTGCAAATGAAAACAACCTTGTTAGTGTTCCTTCTTTGTATAGCTCACAACACCAATCTCAATCTAATCATCAAATCACAACCTTTGCAAACATGTCAGCAACTGCTTTGTTACAAAAAGCTGCTCAAATTGGGACAACAACTTCAACTGATTCATTATACCTTGGAAGTTTAGGATTGAGATGTAATAGTCCAAGTCAAGATCATGGTAACAAATTTTGTGGGGTGTTTACAACAAGTGATCATGGTACAGCAGAGTACTATTCAGGTGAATTGTCACAAATGCCCCCAACAAAACGACGACGTGTGCAGAATGAAGAGAATGTTTGGGGACAAACTAGGGATTTCCTTGGTGTTGGTGGTGCTAACCATTTGCATCCATTCATCCATCAGAAGATGGATTTGATTTGA 1329 0.3695 MDNRDISNGFLHENTTSSSNENPPILKRKRNLPGNPDPEAEVISLSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDMKAHSKTCGTREYKCDCGTIFSRRDSFVTHRAFCDALAEETARINGSTNSLLGMGGNNIANYNIMQNSLIPNIGGTHFSSIFKPNSCTNQETTNQTSRSGLSLWMSQTSHDTILANNNNLHETYHQNWVFGNKFSSNNESQELTSSVSLPLVNNNNIDKDSANENNLVSVPSLYSSQHQSQSNHQITTFANMSATALLQKAAQIGTTTSTDSLYLGSLGLRCNSPSQDHGNKFCGVFTTSDHGTAEYYSGELSQMPPTKRRRVQNEENVWGQTRDFLGVGGANHLHPFIHQKMDLI* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4089 442 PANTHER F-BOX ASSOCIATED PROTEIN 14 441 - -
Tpr7g4089 442 MobiDBLite consensus disorder prediction 1 36 - -
Tpr7g4089 442 Gene3D Classic Zinc Finger 89 180 - -
Tpr7g4089 442 MobiDBLite consensus disorder prediction 8 25 - -
Tpr7g4089 442 SMART c2h2final6 132 152 IPR013087 -
Tpr7g4089 442 SMART c2h2final6 56 78 IPR013087 -
Tpr7g4089 442 SMART c2h2final6 97 127 IPR013087 -
Tpr7g4089 442 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 441 - -
Tpr7g4089 442 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Tpr7g4089 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Tpr7g4089 442 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4089 Tpr-Chr7 49930589 49933795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4089 22 426 IDZ Gene Family AT1G03840 53.105 1.05e-135 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr7g4089 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4089 K25870 - gmx:100778666 608.601