Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3806 ATGGGAAGCAAGGTCACCGATCCCAATCTCTCCACCGTCCGATCCATCGTCGGTTCCGAATTCTCCGACATGGACATCATCAGAGCTCTACACATGGCCAAAAACGACGTCACTGCCGCCATTAACATCATCTTCGATACCAATACTCCTAAATTCAAACCCACTCGCATAATTAGTAAACAACAAGTTTCTTCTCCGAAATCATCTCCACGCGCCGTCACCACCAGCTCCAAGAAAAACAACGCTGATGTAGAAAATAAGAAATGTTCCGTTGCGACTGAGTTGGATTCAGAATCCGTTGATTGGTGGTTCGTTGGTTCCGGTGATGTGGCAGGGCTGTCGACGTGTAAAGGAAGGAGTATAAAGTCTGGTGATAAAGTTATTTTCAAATTTCCAACTAAAAAGGTTTCTGTTTCGCCGTCTCCGGGTAAGGGTTTTGGTCGAGCAGCGAGTTGTTCGGAGATAGTTCGATTTTCTAATGAACAAGATTGGGAGATTGGTAGAATACCGAATGAATGGGCTCGATGTTTGTTGCCGCTGGTGCGAGATAATAAGGTTAGGGTTGAAGGGAAATGTGAATTTGCGCCTAATGTTTTGGGCATCATGGATAATATCAATTTGTCGATCAGTGTTTTCATCAATAGGTCAATGTTTGTTAAGCATCACCATGTTTCTCTTAAGGATGCTACAAGTTCAACCGATGAATCAGTGTTTCATCCTCTTCCAGCCCTGTTTCGATTGCTTGGCCTGAGCCCTTTCAAGAAGGCAGAGTTAACTCCTGGTGATTTCTATTCCAACAAGCGCCCTTTCAGTCAAACGGTAACATCACTACATGCCAAGTCTGAGCGTCCTTCTCAAAATGGTCATGAGAATGAAAATGAGGACCCTGTTTCCGAGTTTGATCTTGATAACATTGTTGGTGTTGCATCAAGCTCAGAGTTAGAGGAAATGGACCCCCCTGAAAATCTTCTTTGTGAACTGCGACCCTATCAAAAACAGGCTCTTCATTGGATGATTCAGATGGAGAAGGGACGGTCAAGGGACGAGACTACAACAACCCTTCATCCATGTTGGGAGGCATATCGCCTGGCTGACAAGAGGGAGCTTGTTGTTTATTTAAATGCATTTTCTGGTGAAGCCACAACGGAATTTCCTAGCACCCTAGAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGACTTGGAAAGACTGTAATGACCATATCCCTTCTCATTGCCCATTCCGGAAGGGGTGGATCGTTAGGCAGTCAACCCGCAACTCAGTCATTTATTGAAGGTGGTGATACTGGTACAGTTCCCAAATTTTCAATCATTCCAAAGAAGGCAACCAAATTTACTGGATTTGATAAACTGACAAAGCAAAACACTTCTTTATCAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCATGTGCACCCTGGGTCCCTGTCTCTATATGTTCATTACGGACAAAGTAGGCCCAAAGATGCAAAAAGTCTAGCTCAATGCGATGTTGTAATTACTACATATGGAACTATGGCCTCTGAATTTTCCAGTGAGAATGCAGAGAATAATGGTGGACTCTTCTCCATTCGTTGGTTCAGAGTGGTTCTTGACGAGGCACATACTATAAAATCTTCTAAAAGCCAAGTTTCTATGGCAGCATCTGCTCTAATTGCTGACAATCGCTGGTGTCTTACTGGGACTCCAATCCAGAACAATCTTGAGGATGTTTACAGCCTTCTTCGCTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAGCTTATTCAGAAACCATTTGAGGGTGGTGATGAGAGAGGATTGAAATTAGTTCAGTCCATTTTGAAGCCTATCATGTTGAGGAGAACCAAGCATAGCACAGATCGAGAGGGCAAGCCTATACTAGTTCTCCCTCCCGCCGATATGCAGATAATTTACTGTGATCCCACAGAAGCTGAAAAGGACTTCTATGAGGCCCTATTCAAAAGATCTAAGGTAAAGTTTGATAAGTTTGTTGAGCAAGGACGCATTCTTCATAATTATGCTTCAATACTAGAGCTACTTTTACGTCTTCGGCAATGTTGTGACCATCCATTTCTCGTAATGAGTCGAGGTGATACTCAAGAATTTTCCGATCTAAGCAAACTAGCTAAGCGCTTCCTTAGAGGAACCGGTAATGCTTCAGAAGGTGAAGTAAAAGATGCAGTCTCACGAGCTTATGTTGAAGAAGTTGTGGAAGAGTTGCGTAATGGAGAGCAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCCGTGTTGACACCATGTGCTCACCGCCTTTGCCGGGAATGCCTCTTGGCAAGTTGGCGAAATTCTAGCTCTGGCTTATGTCCTGTTTGTAGGAAAACAATCAGCAAGCAGGACCTTATCACCGCCCCTACTGAGAGTCGATTTCAGGTTGATATCGAGAAGAACTGGGTAGAGTCATGCAAGATAACTGGTCTTTTGAATGAACTTGAAAATCTTCGCTCATCGGGATCTAAGAGCATAGTTTTTAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTAGGAATAAAATATCATTTGTTCGACTTGATGGGACATTGAATTTGCAGCAGCGTGAAAAAGTTATCAAACAATTCTCAGAAGACAGCGACATACAGGTGTTGTTGATGTCACTAAAAGCTGGCGGAGTGGGTATAAATCTAACAGCAGCTTCCAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAAGAACAAGCTGTTATGCGCATTCATCGCATTGGACAAACAAAGAAGGTGGCCATCAAACGGTTTATTGTGAAGGGGACAGTAGAGCAGAGAATGGAGGCAGTGCAAGCACGCAAACAACGAATGATTTCTGGTGCCTTGACTGACCAGGAAGTTCGATCTGCACGGATTGAGGAGTTGAAGATGCTTTTTACATAG 3027 0.4394 MGSKVTDPNLSTVRSIVGSEFSDMDIIRALHMAKNDVTAAINIIFDTNTPKFKPTRIISKQQVSSPKSSPRAVTTSSKKNNADVENKKCSVATELDSESVDWWFVGSGDVAGLSTCKGRSIKSGDKVIFKFPTKKVSVSPSPGKGFGRAASCSEIVRFSNEQDWEIGRIPNEWARCLLPLVRDNKVRVEGKCEFAPNVLGIMDNINLSISVFINRSMFVKHHHVSLKDATSSTDESVFHPLPALFRLLGLSPFKKAELTPGDFYSNKRPFSQTVTSLHAKSERPSQNGHENENEDPVSEFDLDNIVGVASSSELEEMDPPENLLCELRPYQKQALHWMIQMEKGRSRDETTTTLHPCWEAYRLADKRELVVYLNAFSGEATTEFPSTLEMARGGILADAMGLGKTVMTISLLIAHSGRGGSLGSQPATQSFIEGGDTGTVPKFSIIPKKATKFTGFDKLTKQNTSLSSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRPKDAKSLAQCDVVITTYGTMASEFSSENAENNGGLFSIRWFRVVLDEAHTIKSSKSQVSMAASALIADNRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCDPTEAEKDFYEALFKRSKVKFDKFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQEFSDLSKLAKRFLRGTGNASEGEVKDAVSRAYVEEVVEELRNGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSSSGLCPVCRKTISKQDLITAPTESRFQVDIEKNWVESCKITGLLNELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNKISFVRLDGTLNLQQREKVIKQFSEDSDIQVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEQRMEAVQARKQRMISGALTDQEVRSARIEELKMLFT* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3806 1008 ProSitePatterns Zinc finger RING-type signature. 788 797 IPR017907 -
Tpr7g3806 1008 SUPERFAMILY RING/U-box 760 819 - -
Tpr7g3806 1008 SMART HIRAN_2 105 213 IPR014905 GO:0003676|GO:0008270|GO:0016818
Tpr7g3806 1008 CDD RING-HC 773 812 - -
Tpr7g3806 1008 SMART ring_2 773 812 IPR001841 -
Tpr7g3806 1008 SMART helicmild6 872 955 IPR001650 -
Tpr7g3806 1008 Pfam HIRAN domain 106 209 IPR014905 GO:0003676|GO:0008270|GO:0016818
Tpr7g3806 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 1002 IPR027417 -
Tpr7g3806 1008 PANTHER DNA REPAIR PROTEIN RAD5 109 1008 - -
Tpr7g3806 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 736 835 IPR013083 -
Tpr7g3806 1008 CDD SF2_C_SNF 839 966 - -
Tpr7g3806 1008 Pfam Helicase conserved C-terminal domain 844 955 IPR001650 -
Tpr7g3806 1008 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 843 1008 IPR001650 -
Tpr7g3806 1008 SMART ultradead3 323 623 IPR014001 -
Tpr7g3806 1008 MobiDBLite consensus disorder prediction 59 80 - -
Tpr7g3806 1008 CDD DEXDc_SHPRH-like 327 639 - -
Tpr7g3806 1008 CDD UBA_Cbl_like 9 47 - -
Tpr7g3806 1008 MobiDBLite consensus disorder prediction 274 300 - -
Tpr7g3806 1008 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 385 601 IPR014001 -
Tpr7g3806 1008 ProSiteProfiles Zinc finger RING-type profile. 773 813 IPR001841 -
Tpr7g3806 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 639 IPR027417 -
Tpr7g3806 1008 Gene3D - 385 651 IPR038718 -
Tpr7g3806 1008 Gene3D - 655 1008 IPR027417 -
Tpr7g3806 1008 Pfam Zinc finger, C3HC4 type (RING finger) 770 818 - -
Tpr7g3806 1008 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 109 1008 - -
Tpr7g3806 1008 Pfam SNF2-related domain 330 717 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3806 Tpr-Chr7 47135293 47144987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3806 1 1008 RAD5 or RAD16-like Gene Family AT5G22750 69.598 0.0 1457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr7g3806 SNF2_N 5e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3806 K15505 - gmx:100794558 1694.48