Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3294 ATGGCTACGGTTGTTGCTGACATTTCAGCTGATGCAAACAAAATGGACTCAAAACCAAAGGCTGAATCTGAATTCAGTGTTCAGAAACTTGTTGACATGTTCACAAAGTTGAATCCTTTGGCTAAGGAGTTTTTTCCTTCTTCTTATTCTCCTAATCATGATCAGACTCGTCAGGGTTATAATCTGCTTACTCCTAACAATTTTCTGGTTAATACTAAGCCATCTGCTAATGATAATAACCCAAATAATCGAAGGAGGAGAAACAATTTTACTCAAGGGAGGAGAAGGTTGAATGGAAGATCACTAAAGGCTCAAAGGGAAGATAGCGTTAGAAGAACCGTATATGTTTCTGATATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTATTCACCAACTGTGGACAAGTCATTGATTGCCGAATTTGTGGTGATCCGCATTCAGTTCTTCGTTTTGCTTTTGTCGAGTTTTCAGATGAACATGGAGCAAGGGCTGCTTTGAACCTTGGTGGTACTGTGCTCGGATACTATCCAGTTAGGGTCCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTTCCTAGGTCAGATGATGAGCGGGAAATGTGTACCAGGACTGTCTATTGTACAAATATTGACAAAAAGATTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGGTTACGCGCTTGAGGCTTTTGGGGGACCAGGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATTGCAGACAGTGCCATCGTTGCACTTAACTGTAGCGGCATGCTCTTGGGAACCCAGCCTATCAGGGTAAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCAGTATCGCGTTAA 894 0.4273 MATVVADISADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDQTRQGYNLLTPNNFLVNTKPSANDNNPNNRRRRNNFTQGRRRLNGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFTNCGQVIDCRICGDPHSVLRFAFVEFSDEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKNFFESACGEVTRLRLLGDQVHSTRIAFVEFAIADSAIVALNCSGMLLGTQPIRVSPSKTPVRPRVTRPVSR* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3294 297 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 13 296 - -
Tpr7g3294 297 MobiDBLite consensus disorder prediction 67 87 - -
Tpr7g3294 297 CDD RRM2_CID8_like 205 286 IPR034825 -
Tpr7g3294 297 SUPERFAMILY RNA-binding domain, RBD 76 188 IPR035979 GO:0003676
Tpr7g3294 297 SMART rrm1_1 210 281 IPR000504 GO:0003723
Tpr7g3294 297 SMART rrm1_1 113 183 IPR000504 GO:0003723
Tpr7g3294 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 187 IPR000504 GO:0003723
Tpr7g3294 297 MobiDBLite consensus disorder prediction 67 105 - -
Tpr7g3294 297 Gene3D - 70 188 IPR012677 -
Tpr7g3294 297 Gene3D - 197 291 IPR012677 -
Tpr7g3294 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
Tpr7g3294 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 278 IPR000504 GO:0003723
Tpr7g3294 297 CDD RRM1_CID8_like 110 189 IPR034823 -
Tpr7g3294 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 285 IPR000504 GO:0003723
Tpr7g3294 297 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 13 296 - -
Tpr7g3294 297 SUPERFAMILY RNA-binding domain, RBD 199 291 IPR035979 GO:0003676
Tpr7g3294 297 Pfam Ataxin-2 C-terminal region 33 48 IPR009818 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3294 Tpr-Chr7 40823542 40828882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3294 109 266 Eukaryotic Initiation Factors Gene Family AT1G34140 25.466 1.64e-10 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3294 7 40823542 40828882 Tpr7g3294 7 40823542 40828882 ECH