LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g3250	ATGGAAGATAATGAATGGAATCACTATGATCCTCTTCTTCTCACTGACGTTTCTTTTCAACAACAAAAAACCATTTCCACTAGTGTTTCACAATTATCTCTTAGCTCTCTGAATTCAGCTATGGATGCAGATCCCCAATCTTGTGGTGGAAACCCTAGTTATGGATTGTCTCGGGAAAATGAAAGCTTTGAAAGGAACAGTTTGCAATTTGATGACCCAATTGCGAAAAATTTAGTTGATGGACGATCGGTATTAGGGTTTTCAATGAATTCGCCGGATTTAGTGATCTGTGCTGGCTCACCAGATATTGCAGGAATGAGTTATTGTGATTCTCCTGAGATATCGAAGAGCAAAAATTGCTTCAATTTGGATACATCAATGGAACTTTCTCTTGAGAATGGAATCAATGCATCTGAAGTTGAAGTTTGCAATGTCCATAAGACTCCAACTGTTAAATTTTCCAATTTGTGTCAAACTATTGAACCGGAAGAAGAGTTACTATCACCTGAAGCCTCATTTGAGCTTCATCCGCCACCGATAACAAACGACGAGTCGCCTCGAGATTACTCGCTTAGAGATAATGAAATGTTAGAAGATGCTAGAGTGTCTCAGGAGGAAGAATTGGAATGCTCAGAAGATGCTGAGGATATCGGGGTAGAAGAGAAGTTTCTGAAGCTGAAAAGAGATTTTGAGTGTCAGAGAAAAGAGCTGGCAGTAACTAGGAGGGAGTTGGGGGAGCTCAAGAGGGAGAATCAGCAGAAAAGTAGTGAATGTCAAGAAGCTTTGAAGTCCTTAAAAGAGCTTCAGAATGAGCTAATGCGCAAGTCGATGCACGTAGGATCTTTAGCATTTGCTATTGAAGGGCAAGTGAAAGAGAAAAGCAAGTGGTTTATTTCACTAAGAGACTTGACGAGGAAATTGAAGATTATGAAAATGGAACACATGAAGCTATTAGAGGAAGCAGAAGCATACAAGAAATATGAAGCTGATATAAGTGAATTGGGACTCATCATCAAGTCTAAAATGAATGAACAACTAGCGTCACATGAAGATCTCAAGTCCAAATATATTGAAGGGGCTAAGGTTCAAAAAGAGCTTTACAATAAGGTATTGGAGTTGAGAGGAAACATAAGGGTCTTTTGCCGGTGTAGGCCGCTCAATGCTGAAGAGATAAAAGGAGGAGCCGCAATGGCCTTAGATTTTGATTCTGCTAGAGATGGTGAGCTTACTGTAATGTCAAATGGATCTCCAAAAAAGACTTTTAAGTTTGATGCTGTGTTTAGCCCTCAAGTTGAACAAGCTGATATCTTTGTGGACACTGTACCATTTGCAACCTCGGTTTTAGATGGATACAATGTATGCATTTTTGCATACGGACAAACTGGTACAGGAAAAACCTTCACAATGGAGGGCACAGAAGACGCTCGTGGAGTTAATTTCAGGACTCTTGAGAAAATGTTTGATATAATCAAGGAAAGACAATCCCTCTATCGTTATGATGTTTCCGTAAGTGTCTTAGAAGTGTACAATGAGCAAATAAGAGATTTGCTGGTTTCAGGAAATCATCCAGGAATGTCTGGAAAAAGATTGGAGATAAGGCAATCTGGTGATGGAATGCATATTCCGGGGTTGGTTGAGGCACATGTGAACAACATGAATGAAGTGTGGGAAGTCCTACAAACTGGTAGCAATGCAAGGGCCGTAAGCTCAACTAATGCGAACGAGCACAGTAGCCGATCTCACTGCATTCACTGTGTCATGGTTAAGGGAGAAAATCTGTTGAATGGAGAACACACTAGAAGCAAGTTATGGCTTGTGGACTTAGCAGGCAGTGAAAGAGTTGCAAAGACAGAAGTTCAAGGTGATAGATTGAAGGAGACACAGAATATTAATAGATCTCTTTCTGCACTTGGTGATGTCATTTCAGCTCTTGCAACTAAAAGTTCTCACATCCCTTTCAGGAACTCTAAGCTTACACACTTGTTACAAGACTCATTAGGAGGAGACTCAAAGACACTCATGTTTGTACAGATCAGTCCTAATGAAAACGATTTGGGCGAGACAATTTGCTCTCTAAACTTTGCTAGTAGAGTAAGGGGGATAGAATTGGGCCCTCCAAAAAAACAGTGGGACACTATTGAACTTCTGAAACATAAACAGATGGCTGAGAAAACTAAACAAGAGCTAAAGCTGAAGGACTTTCAAATCAAGAAGATGGAGGAAACAATCCATGGCTTCGAGTCCAAAATGAAGGAAAAAGATCATAAAAACAAAGCTCTTCAAGATAAGGTCAAGGAACTGGAATCGCAACTTATGATTGAGAGAAAGTTAGCGCGTCAACATGTAGACTCGAAGATAGCTGAGCAACATCAAATGAAGCATCAAGAAGAGCAAAACAATCCAATTTGGAGAGCAACACCACTTGCAAATAGACCATTAGCAACTCTCAAAAATTTTAATGATCCTGCTAAACCTTTAACCGAGAACAACATCTTAAAACCTTACAATATACCCTTTTCTACAATAGAAAGCTCCATCGAGTGTATTGATCACAATGAGAAAGAAAACAACCCCGACATGGCCGATATCAAATCACTACTTCCAAAGAAGACATCAAGAGCTTCATTATGCACAATGACACCGCGCGGTGTTCCTTCGACAGCTATTTCAAGGAGAAACTCTTTGATTCCACTCCCAAACTTAACACATTTTCAATCATCACCGTTCATACCAAAGTTAACAAACCAAGAAGTAAACGAGGAATCAGAAACCTTACAAGAGAGTCCTAAAGAAGTTAAAAGTGGTGTTAAGAAGATAGGTAGCATACTAAGAAGAAGCATACATAAGAAAGGACAAGTGAGGTCTCCATTACAACAACATATGAGAAAAGTTGGTGGTGTAAATGTAGGGATGGAGAAAGTGAGAGTTTCTATTGGAAGTAGAGGGAAATTGGCACAAAGAGGGGTGCAAGTTGGAAATGGGAGAAGAGGTGGGGGTGCAAAAGAGATTCAACAGAAGAATAGTCATAAGGACAAGGAAAGGGCATGGATATAA	3054	0.3995	MEDNEWNHYDPLLLTDVSFQQQKTISTSVSQLSLSSLNSAMDADPQSCGGNPSYGLSRENESFERNSLQFDDPIAKNLVDGRSVLGFSMNSPDLVICAGSPDIAGMSYCDSPEISKSKNCFNLDTSMELSLENGINASEVEVCNVHKTPTVKFSNLCQTIEPEEELLSPEASFELHPPPITNDESPRDYSLRDNEMLEDARVSQEEELECSEDAEDIGVEEKFLKLKRDFECQRKELAVTRRELGELKRENQQKSSECQEALKSLKELQNELMRKSMHVGSLAFAIEGQVKEKSKWFISLRDLTRKLKIMKMEHMKLLEEAEAYKKYEADISELGLIIKSKMNEQLASHEDLKSKYIEGAKVQKELYNKVLELRGNIRVFCRCRPLNAEEIKGGAAMALDFDSARDGELTVMSNGSPKKTFKFDAVFSPQVEQADIFVDTVPFATSVLDGYNVCIFAYGQTGTGKTFTMEGTEDARGVNFRTLEKMFDIIKERQSLYRYDVSVSVLEVYNEQIRDLLVSGNHPGMSGKRLEIRQSGDGMHIPGLVEAHVNNMNEVWEVLQTGSNARAVSSTNANEHSSRSHCIHCVMVKGENLLNGEHTRSKLWLVDLAGSERVAKTEVQGDRLKETQNINRSLSALGDVISALATKSSHIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNENDLGETICSLNFASRVRGIELGPPKKQWDTIELLKHKQMAEKTKQELKLKDFQIKKMEETIHGFESKMKEKDHKNKALQDKVKELESQLMIERKLARQHVDSKIAEQHQMKHQEEQNNPIWRATPLANRPLATLKNFNDPAKPLTENNILKPYNIPFSTIESSIECIDHNEKENNPDMADIKSLLPKKTSRASLCTMTPRGVPSTAISRRNSLIPLPNLTHFQSSPFIPKLTNQEVNEESETLQESPKEVKSGVKKIGSILRRSIHKKGQVRSPLQQHMRKVGGVNVGMEKVRVSIGSRGKLAQRGVQVGNGRRGGGAKEIQQKNSHKDKERAWI*	1018

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g3250	1017	Coils	Coil	194	214	-	-
	Tpr7g3250	1017	PANTHER	KINESIN-LIKE PROTEIN KLP-3	210	1002	-	-
	Tpr7g3250	1017	Coils	Coil	722	777	-	-
	Tpr7g3250	1017	MobiDBLite	consensus disorder prediction	989	1017	-	-
	Tpr7g3250	1017	Gene3D	Kinesin motor domain	371	745	IPR036961	-
	Tpr7g3250	1017	PANTHER	KINESIN-LIKE PROTEIN KIN-14Q	210	1002	-	-
	Tpr7g3250	1017	PRINTS	Kinesin heavy chain signature	450	471	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr7g3250	1017	PRINTS	Kinesin heavy chain signature	571	588	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr7g3250	1017	PRINTS	Kinesin heavy chain signature	602	620	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr7g3250	1017	PRINTS	Kinesin heavy chain signature	651	672	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr7g3250	1017	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	376	739	IPR027417	-
	Tpr7g3250	1017	ProSitePatterns	Kinesin motor domain signature.	601	612	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
	Tpr7g3250	1017	Pfam	Kinesin motor domain	382	701	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr7g3250	1017	CDD	KISc_C_terminal	374	703	-	-
	Tpr7g3250	1017	MobiDBLite	consensus disorder prediction	1002	1017	-	-
	Tpr7g3250	1017	ProSiteProfiles	Kinesin motor domain profile.	376	701	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Tpr7g3250	1017	Coils	Coil	300	320	-	-
	Tpr7g3250	1017	Coils	Coil	230	278	-	-
	Tpr7g3250	1017	SMART	kinesin_4	374	709	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g3250	Tpr-Chr7	40263359	40269052	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g3250	318	728	Calmodulin-binding Proteins	AT5G65930	39.614	1.19e-77	276

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr7g3250	7	40263359	40269052	Tpr7g3250	7	40263359	40269052	ECH