Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3216 ATGGCGAAACCTGGCCGAGCTCGCCGCTCACCACCGTCGGGTTCCGCCTCCGGATCTTCTTCTCTCTCCTCCTCTTCTGGTTCCTCTCGCTCTCGCTCTCGGTCCCGTTCCAGATCTTTCTCTTCCTCCTCATCTCCCTCCCGCAGTTCCAAGAGCCGTAGCCGTAGTCCTCCTCCTCAGAGACGCAAAAGTCCTGGTGAATCAGCTAGGCGGGGTCGATCTCCTCCTCTTCCTCCCCCTCCCCAGTTTAAGAGAACTTCTTCTCCCACAAGGAAACCTTCTCCTGTACGAGAGTCTCTTGTTCTGCACGTAGAAAAACTCAGCAGGAATGTCAATGAAGGCCATCTGAAAGAAATCTTTAGTAATTTTGGTGAGGTGGCAAGTGTGGAGTTGGTGATGGATCGAGTTGTTAATCTTCCAAAAGGATATGGGTATGTGCATTTCAAGACAAGAGGCGATGCTGAAAAAGCATTATTGTACATGGATGGAGCGCAGATAGATGGCAACGTCATTAAGGCAAAATTTACTCTGCCTCCAAGGCAGAGAGTTTCACCACCCCCAAAGGCTTCTGCTGTTGTTCCAAAGAGAGAGGCGCCTAGGACTGATATTGCTGGTGCAGATGTTGAAAAAGATGGGCCAAAGCGTCCAATAGAATCTTCTCCCCGGAGGAAACCTCTCTCACCACGGAGAAGATCTCCTGTGCCTCGAAGAGCTGGATCTCCAAGACGACCTGAATCTCCTCGCCGCCGTGCAGGTTCTCCTGTCCGTCGTCGATTAGACTCTCCTTATCGCCGTGGAGCTGGAGACACACCTCCTAGGAGGAGACCCGTGTCTCCTGGAAAAGGTCGTTCTCCATCTCCACCACCAAGGCGCTTTAGATCCCCTGGAAGGGTCTCACCTAGAAGGATACGTGGAAGCCCAGGTCGGAGACGTTCTCCTCCTCCACCTATAAGACGCCGTTCACCTCCTAGACGAGCTCGTAGTCCTCCTAGAAGATCTCCGGTTGGTCGTAGGCGTAGTCGCTCTCCAATTCGTAGGTCTGCACGCTCACGCTCTAGATCATTCTCACCTCGCAGAGGTCGACCACCTGTGAGACGTGGAAGGTCATCATCATACTCTGATTCACCAAGTCCTCGCAAGGTGTCTCGGAGATCAAAGAGTCGCAGTCCAAGAAGGCCTTTGAAAGGAAGAGCCAGTAGCAACAGTAGCAGCAGCGCTTCACCACCCCCAGCTCGCAAACCATAG 1245 0.5301 MAKPGRARRSPPSGSASGSSSLSSSSGSSRSRSRSRSRSFSSSSSPSRSSKSRSRSPPPQRRKSPGESARRGRSPPLPPPPQFKRTSSPTRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVASVELVMDRVVNLPKGYGYVHFKTRGDAEKALLYMDGAQIDGNVIKAKFTLPPRQRVSPPPKASAVVPKREAPRTDIAGADVEKDGPKRPIESSPRRKPLSPRRRSPVPRRAGSPRRPESPRRRAGSPVRRRLDSPYRRGAGDTPPRRRPVSPGKGRSPSPPPRRFRSPGRVSPRRIRGSPGRRRSPPPPIRRRSPPRRARSPPRRSPVGRRRSRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLKGRASSNSSSSASPPPARKP* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3216 414 CDD RRM_RNPS1 102 174 IPR034201 -
Tpr7g3216 414 SMART rrm1_1 101 174 IPR000504 GO:0003723
Tpr7g3216 414 MobiDBLite consensus disorder prediction 200 225 - -
Tpr7g3216 414 MobiDBLite consensus disorder prediction 177 414 - -
Tpr7g3216 414 MobiDBLite consensus disorder prediction 1 97 - -
Tpr7g3216 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
Tpr7g3216 414 MobiDBLite consensus disorder prediction 72 86 - -
Tpr7g3216 414 MobiDBLite consensus disorder prediction 241 271 - -
Tpr7g3216 414 MobiDBLite consensus disorder prediction 295 365 - -
Tpr7g3216 414 MobiDBLite consensus disorder prediction 12 54 - -
Tpr7g3216 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 172 IPR000504 GO:0003723
Tpr7g3216 414 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 395 - -
Tpr7g3216 414 PANTHER BNAA09G56240D PROTEIN 1 395 - -
Tpr7g3216 414 SUPERFAMILY RNA-binding domain, RBD 31 175 IPR035979 GO:0003676
Tpr7g3216 414 MobiDBLite consensus disorder prediction 394 414 - -
Tpr7g3216 414 Gene3D - 15 184 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3216 Tpr-Chr7 39898109 39905306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3216 102 175 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 4.28e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3216 7 39898109 39905306 Tpr7g3216 7 39898109 39905306 ECH