Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3182 ATGAAGGATGGTGGAAGAAAACAAGGTGCAATGTCACCATGTGCTGCATGCAAGCTTCTAAGAAGGAGATGTGCTAAAGATTGTGTGTTTGCTCCATATTTTCCAGCTGATGAACCTCACAAGTTTGGTAATGTCCACAAGGTTTTTGGAGCTAGCAATGTGAACAAAATGTTACAGGAATTACCAGAACAACAAAGAAGTGATGCAGTTAGTTCAATGGTATATGAAGCAAATGCAAGAGTAAGGGACCCTGTTTATGGATGTGTAGGAGCCATATCCTCTCTACAGCAACAAGTTGATGTTCTTCAAACTCAATTAGCACAAGCACAAGCAGAGGTTGTGCACATGAAAATGCACCAATTCTCATCACCAAATCAGCACCAACCATCATATACTCCTTCAGCCTCCAATTCATCACCACCTTCAGAAAATGTGTACCAATCAAGCCGGCTCGTTACTTCACACATCAACATTGACCAATCCTTATGGTCATACTAG 498 0.4137 MKDGGRKQGAMSPCAACKLLRRRCAKDCVFAPYFPADEPHKFGNVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLAQAQAEVVHMKMHQFSSPNQHQPSYTPSASNSSPPSENVYQSSRLVTSHINIDQSLWSY* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3182 165 Coils Coil 92 112 - -
Tpr7g3182 165 MobiDBLite consensus disorder prediction 120 148 - -
Tpr7g3182 165 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Tpr7g3182 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 143 - -
Tpr7g3182 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 143 - -
Tpr7g3182 165 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3182 Tpr-Chr7 39523772 39530685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3182 1 164 AS2 family AT1G31320 66.667 6.60e-67 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr7g3182 LOB 2.4e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3182 7 39523772 39530685 Tpr7g3182 7 39523772 39530685 ECH