Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2038 ATGCAAACGATCATGGATCCCACCAAAAAGCGCAAGCTTGACGAGAACGGTTTCGGTGGAGAAGCTGATCACCTAAAGCTCTCCCCATCTGAAGCCCGCAAGGTCATCGAGCGATTCACCCCTGACCAGCTAATCGACATCCTCCGAGACGCCGTCGTCCGCCATCCAGATGTTCTCTCCGCCGCTCGTGCAGTTGCAGACACTGACATCTCCCAACGCAAGCTATTCATCCGCGGCCTTGGCTGGGACACCACTACTGAAGGTCTCCGCTCACTCTTTTCAACCTACGGTGAACTCGAGGAAGCTATCGTGATCCTCGACAAGGTCACCGGGAAGTCAAAGGGTTACGGCTTTGTCACCTTCCGCCACGTGGACGGAGCCCTACTCGCACTCCGTGAGCCTAGCAAACGCATCGATGGACGCGTAACTGTCACGCAGCTGGCCGTAGCAGGGAATTCAGGCTCCAACACCAATGCAGCTGACATTGCGCTCCGTAAAATATATGTGTCCAACGTGCCGCCAGATCTCGCAGGAGATAAGCTTCTAGCCCATTTCTCAATTTATGGAGAGATTGAGGAGGGCCCTTTGGGCTTTGATAAACAGACAGGAAGGTCGAAAGGGTTTGCTCTTTTTGTCTATAAGACTCCGGAGGGGGCACAGGCTGCACTATTGGAGCCCGTCAAGAATGTAGAGGGGCGGCAGTTAAATTGCAAGCTGGCAATAACAGATGGGGGGAAACAGCAAGGGATGCGTGGTGGGCCGGACGGGGTTCAAGGTCGTGGGAATGCTCATGGAAACGGCATGGGGATGACTTCTGCACCTGGGCCTGGGGCGGGTCAATACGGTGGTTCTGTTGGTATTGGTTCCTATGGAGGGTTTTCTGGTGGACACCAGGGTCAGCCTCCAATGGGTAACCATCCTCTGAATTCGTCTGTTGGTGTTGGTTTGTCTTCTGTGGGGAATCAGGCTCCGTCTTCAATGGGTGGTACCGATGGATATGGTGGTGGTCATTATGGGGGTTATGGTGGGCCTGCTGCAACAGGTTTTGGCGGTAGTGGTGGTGGCGGTGCTTATGGCGGAGGAGTTAGTGGTGGTGGCGGTGGTTATGGTGGAGGAGGTAGTGGTGTGACTGGTGCGGGTACTGGTGGTGGACTTGGCTCTGCTGGAGGTAGTGTTGGACTTGCTTCCCTGTATAGATTACCAAGTTCAGGTGGAATGCAAGCTGGTGGGTATCCTGACAGTGGACACTACAGTTCATCGGGTTATCACAATCAGCATCCTCCTCCTGCTGTAGCATCGCCGGTACCAAGGGTTCAACCTGGTTCCATGTATCCAAATGTGCCCCCTTACTACTAA 1356 0.5428 MQTIMDPTKKRKLDENGFGGEADHLKLSPSEARKVIERFTPDQLIDILRDAVVRHPDVLSAARAVADTDISQRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVILDKVTGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAVAGNSGSNTNAADIALRKIYVSNVPPDLAGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGAQAALLEPVKNVEGRQLNCKLAITDGGKQQGMRGGPDGVQGRGNAHGNGMGMTSAPGPGAGQYGGSVGIGSYGGFSGGHQGQPPMGNHPLNSSVGVGLSSVGNQAPSSMGGTDGYGGGHYGGYGGPAATGFGGSGGGGAYGGGVSGGGGGYGGGGSGVTGAGTGGGLGSAGGSVGLASLYRLPSSGGMQAGGYPDSGHYSSSGYHNQHPPPAVASPVPRVQPGSMYPNVPPYY* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2038 451 CDD RRM_RBM24_RBM38_like 73 148 - -
Tpr7g2038 451 SMART rrm1_1 166 238 IPR000504 GO:0003723
Tpr7g2038 451 SMART rrm1_1 74 146 IPR000504 GO:0003723
Tpr7g2038 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 142 IPR000504 GO:0003723
Tpr7g2038 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 233 IPR000504 GO:0003723
Tpr7g2038 451 PANTHER UBP1-ASSOCIATED PROTEIN 2C 5 421 - -
Tpr7g2038 451 SUPERFAMILY RNA-binding domain, RBD 156 267 IPR035979 GO:0003676
Tpr7g2038 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 242 IPR000504 GO:0003723
Tpr7g2038 451 SUPERFAMILY RNA-binding domain, RBD 65 151 IPR035979 GO:0003676
Tpr7g2038 451 Gene3D - 156 299 IPR012677 -
Tpr7g2038 451 MobiDBLite consensus disorder prediction 245 280 - -
Tpr7g2038 451 MobiDBLite consensus disorder prediction 407 451 - -
Tpr7g2038 451 MobiDBLite consensus disorder prediction 292 328 - -
Tpr7g2038 451 Gene3D - 54 155 IPR012677 -
Tpr7g2038 451 MobiDBLite consensus disorder prediction 303 328 - -
Tpr7g2038 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Tpr7g2038 451 PANTHER GEO13361P1-RELATED 5 421 - -
Tpr7g2038 451 MobiDBLite consensus disorder prediction 429 451 - -
Tpr7g2038 451 CDD RRM_RBM24_RBM38_like 165 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2038 Tpr-Chr7 25311592 25314985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2038 161 250 C2H2 Transcription Factor Family AT2G19380 40.860 1.02e-11 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2038 7 25311592 25314985 Tpr7g2038 7 25311592 25314985 ECH