LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g1563	ATGTCTCCATCAATGAAATCAAAATCCAAGTCCAAGGATAAGGCTTCTGCAAAGGTTGTTAAGGAACAACACAAGACTTCTCCAAAGAATTCTGGATCTACTAATGATGAGAGTGGCATTCCTGCTAGTGTGTGTGATCCTATCACGGAAACAGTTCAAACTCTAGAAACGTCGTTGGCTGATTCTTTCGCAAAAATAAACGATACAGATGATCATTCTAGTAGTCCTCAGGGAACAGTGTCTGAGTACGATTCAGTTTCTAATAACGGAAGCTGTTCTGGTGAATCAGAAGACACTAAAGAGAAAGCTGCAAGCTCCTCTACGCGGTTGGATATTATACCTGGTTGTGATAATGACAGAAGGGATAAGATCCGACTGAAAAATGAGAGGAAGCATCAAAGGCAGAGGGAAAGGAGAGCTCATGAATTGCACGAGCGATGTGGTATGTATCTTATGTCGAGGAAGCTAGAAAAACTTTCAGAGAAGTTAGTGGCGATGGGATTCTCTTCTGAGCGAGCAACACTAGCTTTGAAGTTAAATGAAGGCAAATTAGAAGAATCAATATCTTGGTTGTTTGAAGGAAGCGAAGCGAAAGATAATACCAAGCTTGCAAGTGAAAGTAATTTGAAAATTGACATAAGTGAAGAGCTTCAACAGATTTACGCCATGGAAGTGAAGTACAATTGTTCAAAGCAAGAAGTTGAAAGAGTGGTTGTTGCCTGTGAAGGTGATCTTCAAAAGGCAGATGACACATTAAAATCTCAGAAGCAAGAATCTCCTGTGAATCAGTCAGAAGATTCTGCTCAAAATAATAGTTTGACGAGATCTCATGGATTACAACCAGCTTCAGTTTCAATACAGCAGAGAGGGAATGAAAGTGATTTCAACTATTACAATGTATGTGGTGCTGATTCCATGTTTCAAGATACTGAAAATAGGAATCCACAATCTTTACACATGAATCATCAAAATGAACCGACACAGAAAAGATGGGGTGTTAGTGTTACAGCATCAAATCCTTCTAATATGTTACAATCCATGCAAGCAATGTCACCATTTGTTAACATGGAGGCGCAGCCGAGTGCTGCCTTTAGGAACGAAGGAAGAATGATTCATCAAGGAGTAGGAAGGGAACCGGTAGTCATGATGCAGCATCCTCAATTTGCCGATGCCAAACAAAATTATCTGAATTCTATGAATGCCGCCATACCTTCAGCAACATCTGGTTGGTATGTAAACAATGTTCCGGCGTATGAAAATACAAGGTTGAATGGGAATTTACTACTACAAAATCACGGTATGGGGGGAACTGCCGGCACAGATCGCTTGCAGCAACTTTGTCAAGCTCCCTATAAAGAATATTCCCATGGATTTGGGCCGGTAGACTCATCAATCTCATCAGGTGGAATGGGAGGTTTCTATAAACCGATGGCATCGTCGCCTTCACCTGCAATGCCTTCTCACTCTCAACATCATGGTTCATGGAACACCGCCGCATCTTCACCTGCACTTACAGTTCCACCTTCACTTGGATTATTTTGTGGTCATCAGAATCCATCGGCCAGATCATTCAGCTCACATTCGCATGTGGATTGGAATACCGGGGGCATGGTGCAAGAATTCGACTACAACAATATAGATTGGAGTTTAGATTGCCCGTCGTCAACCAAATCAGGTGATGTTTGGCTAGGGTTCTCATCGTCATTGAGAAACAGTGCCGGGAATAGGATGGCTAGTTCTTACATGACAGGATCGCGAAATGTCGGCACGGCGAGGGAAACTTCGTCGTCTGCTGGCTTGCGAGATTGGACCTCGCCTTTTGCTGGGAAGGACATATTCAGTGTTCCCAGGAAGATTGTTACCTTTCCTCCTATGTAG	1878	0.4265	MSPSMKSKSKSKDKASAKVVKEQHKTSPKNSGSTNDESGIPASVCDPITETVQTLETSLADSFAKINDTDDHSSSPQGTVSEYDSVSNNGSCSGESEDTKEKAASSSTRLDIIPGCDNDRRDKIRLKNERKHQRQRERRAHELHERCGMYLMSRKLEKLSEKLVAMGFSSERATLALKLNEGKLEESISWLFEGSEAKDNTKLASESNLKIDISEELQQIYAMEVKYNCSKQEVERVVVACEGDLQKADDTLKSQKQESPVNQSEDSAQNNSLTRSHGLQPASVSIQQRGNESDFNYYNVCGADSMFQDTENRNPQSLHMNHQNEPTQKRWGVSVTASNPSNMLQSMQAMSPFVNMEAQPSAAFRNEGRMIHQGVGREPVVMMQHPQFADAKQNYLNSMNAAIPSATSGWYVNNVPAYENTRLNGNLLLQNHGMGGTAGTDRLQQLCQAPYKEYSHGFGPVDSSISSGGMGGFYKPMASSPSPAMPSHSQHHGSWNTAASSPALTVPPSLGLFCGHQNPSARSFSSHSHVDWNTGGMVQEFDYNNIDWSLDCPSSTKSGDVWLGFSSSLRNSAGNRMASSYMTGSRNVGTARETSSSAGLRDWTSPFAGKDIFSVPRKIVTFPPM*	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g1563	625	MobiDBLite	consensus disorder prediction	7	25	-	-
	Tpr7g1563	625	PANTHER	UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B PROTEIN	1	625	-	-
	Tpr7g1563	625	ProSiteProfiles	Ubiquitin-associated domain (UBA) profile.	154	194	IPR015940	-
	Tpr7g1563	625	Gene3D	-	121	208	-	-
	Tpr7g1563	625	SMART	uba_6	156	193	IPR015940	-
	Tpr7g1563	625	SUPERFAMILY	UBA-like	158	196	IPR009060	GO:0005515
	Tpr7g1563	625	MobiDBLite	consensus disorder prediction	63	94	-	-
	Tpr7g1563	625	MobiDBLite	consensus disorder prediction	252	288	-	-
	Tpr7g1563	625	MobiDBLite	consensus disorder prediction	255	288	-	-
	Tpr7g1563	625	MobiDBLite	consensus disorder prediction	63	141	-	-
	Tpr7g1563	625	MobiDBLite	consensus disorder prediction	1	49	-	-
	Tpr7g1563	625	MobiDBLite	consensus disorder prediction	26	40	-	-
	Tpr7g1563	625	PANTHER	DOMAIN PROTEIN, PUTATIVE-RELATED	1	625	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g1563	Tpr-Chr7	17663421	17666764	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g1563	7	414	EF-hand Containing Proteins	AT5G12120	38.889	4.91e-71	239