Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1534 ATGTCTTCATTTAAGGCCTATGGTAAAGTCGATGAATCCGAGCATGTCCTATTCGAAGTTCGAAGGAAATCTCGAAAGCGGATAACAATCATAAGTTTGTCAACAATTCTCCTTGTCGGTATTGTATTTGCAGCGGTTTTTGGAACCATTGCTCACAACAATGCTCATAATGACGGCAACAATGACGACAACAATGATCAATCTCTTTCGAGTTCCGTGAAGGCTATTTGTGATGTTACATTGTACAAGGATTCATGTGAAAGCAGCCTTAGTCCTCTTGTTCATTCGGGTCAAATTCGACCCGAGGAGTTGTTCAAGTTGTCAATTCAAGTTGCATTAAATGCGGTTTCGGAAGGTGTTCAATATTTCTCTGAGCATGGAACTTTTGATGAGTTGAATTTGAATGTTGATAATAGAACAAAGGAAGCATTGATGAATTGTAAGGATCTTTTGGACCTTGCTATTGATCATTTGAATAACTCTTTGTCTTATGGGGGGAAGTCTTCTTTGCTTGATGTTTTGGAGGACCTTGAAACTTGGTTAAGTGCTTCAGGTACTTACCAACAAACATGCATTGATGGTTTAGAAGAGGCAGAAGAATTATTAAAGTCCAGCATTACAACCAATCTCAAAAACTCTACAGAATTAACAAGCAATAGTCTTGCAATCATCACATGGCTTAACAAGGCTGCAAATTCAGTAAACTTTCGACGCTTACTAAGTTTGTCTCATCAAAATGAAGAACAACCAAATTGGCTTCATCATAAAGACAGAAAATTACTTCAAAAAGACACTGATTTAAAGAAGAAAGCCGACATTGTTGTAGCGAAAGACGGGAGTGGAAAATACAAAACAATTTCAGCTGCATTGAAACATGTCCCTGATAAAAGTGACAAGAGGACTGTGATTTATGTGAAAAAAGGAACTTATTATGAAAATGTTAGGGTGGAAAAGACTAAATGGAATGTCATGATTATTGGTGATGGTATGAATGTTACTAGTGTTTCTGGAAGTTTAAATTTTGTGGATGGCACACCAACCTTTTCAACAGCAACATTTGCTGTATTTGGGAAGAATTTCATTGCTAGGGACATAGGCTTTAAGAACACAGCTGGTCCACAAAAGCACCAAGCAGTAGCACTAATGACAAGTGCAGATCAAGCAGTTTACTACAAATGTTCCATAGATGCATATCAAGACACACTCTACGCTCACTCGAATCGTCAATTCTACCGCGAATGCAACATCTATGGAACAGTCGATTTCATTTTTGGCAACTCAGCAACCGTCATACAAAACTGCAATATTTTACCAAAACAACCTATGCAAGGACAACAGAACACAATAACAGCACAAGGCAAAACTGATCCTAACATGAACACAGGAATTTCAATTCAAAATTGCAATGTTTCGCCATTCGGAAACTTAAGTTCTGTTAAAACATATTTAGGAAGACCTTGGAAGAATTACTCGACAACGGTGTTTATGCAATCTACATTGGGAGATTTTATTAGTCCAAATGGTTGGTTACCTTGGGTTGGAGATTCTGCACCAGATACTATATTCTATGCTGAATTTCAAAATGTTGGAAAAGGTTCTTCAACAAAGAATAGGGTGAAGTGGAAAGGTTTGAAAAATATTACAAGTAAAGAAGCTAAGAAATTTACAGTTAAGGCTTTTCTTTCTGGTGATAGATGGATTCCTACTTCTGGTGCTACATTTAAATCATCTCTTTAA 1737 0.3708 MSSFKAYGKVDESEHVLFEVRRKSRKRITIISLSTILLVGIVFAAVFGTIAHNNAHNDGNNDDNNDQSLSSSVKAICDVTLYKDSCESSLSPLVHSGQIRPEELFKLSIQVALNAVSEGVQYFSEHGTFDELNLNVDNRTKEALMNCKDLLDLAIDHLNNSLSYGGKSSLLDVLEDLETWLSASGTYQQTCIDGLEEAEELLKSSITTNLKNSTELTSNSLAIITWLNKAANSVNFRRLLSLSHQNEEQPNWLHHKDRKLLQKDTDLKKKADIVVAKDGSGKYKTISAALKHVPDKSDKRTVIYVKKGTYYENVRVEKTKWNVMIIGDGMNVTSVSGSLNFVDGTPTFSTATFAVFGKNFIARDIGFKNTAGPQKHQAVALMTSADQAVYYKCSIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSATVIQNCNILPKQPMQGQQNTITAQGKTDPNMNTGISIQNCNVSPFGNLSSVKTYLGRPWKNYSTTVFMQSTLGDFISPNGWLPWVGDSAPDTIFYAEFQNVGKGSSTKNRVKWKGLKNITSKEAKKFTVKAFLSGDRWIPTSGATFKSSL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1534 578 Pfam Plant invertase/pectin methylesterase inhibitor 72 223 IPR006501 GO:0004857
Tpr7g1534 578 Gene3D - 267 578 IPR012334 -
Tpr7g1534 578 SUPERFAMILY Pectin lyase-like 270 574 IPR011050 -
Tpr7g1534 578 Pfam Pectinesterase 272 564 IPR000070 GO:0030599|GO:0042545
Tpr7g1534 578 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Tpr7g1534 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 229 IPR035513 -
Tpr7g1534 578 PANTHER PECTINESTERASE 5 576 - -
Tpr7g1534 578 TIGRFAM PME_inhib: pectinesterase inhibitor domain 66 227 IPR006501 GO:0004857
Tpr7g1534 578 PANTHER PECTINESTERASE 5 576 - -
Tpr7g1534 578 SMART PMEI_2 68 223 IPR006501 GO:0004857
Tpr7g1534 578 CDD PMEI-like_3 75 229 - -
Tpr7g1534 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 227 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1534 Tpr-Chr7 17230504 17234362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1534 1 578 Carbohydrate Esterase AT3G10710 57.931 0.0 683