Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1478 ATGTCATTCTCATGTGTCAAGAAAATTTTCAAGAGGTTTTGGGATGATGAATTCCAAACTGATCTCTTGCCATCTCTTGGAGCAAGAATCAACCAAGAAATTGAACTAAGGAGATACATAATCTCCCCCTTCAATCCAAAGTATAGTACCACTGAGCTGACATCTGATGGACTCGTAATTTATTGTAGGACTTGGGAGACGTGGTTGATAGTTCTAGTGATTTATTCTGCATGGATATACCCCTTTCAATTCGCATTTCTGACTTATAAGATTGACACACTATTCATCATAGATAACATTGTGAATGGTTTCTTTGCCATTGACATAGTGATGACATTCTTTGTTGCATATCTTGATGACCATTCTTACCTTCTTGTTGGTGAGCCTAAGAAAATTGCGGTCAGGTACTTATGTACCTGGTTTATCTTTGATGTTTGTTCAACTGCACCTTTTCAATCTATTAGCTCGTTATTCACCCATAATAGCAGCGAGATTGGATTCAAAATTCTTAACATGCTTCGGTTATGGCGTATCAGACGAGTCAGTTCTCTGTTTGCAAGACTTGAGAAAAACATTCACTACAATTACTTTTGGACTAGGTGCTTGAAGCTCGTTGCTGTGACCTTGTTTGCAGTACACTGTGCTGGATGCTTAAACTATTTAATTGCAGATAGGTACCATGATCCCAAAAGGACATGGATTGGTGCTGTGTACCCAAATTTTAAGGAAATGAGTCTTTGGGATAGATATGTGACATCAATGTATTGGTCAATTGTGACACTAACTACAACTGGATATGGAGATTTACATGCTAATAACACTGGTGAGATGCTGTTTGACATTTTCTACATGTTGTTCAACTTGGGATTAACAGCTTATATCATTGGAAACATGACAAATCTTGTTGTTCAATGGACAAGTCACACCAGAAATTTTAGAGATACAGTCAGAGCAGCTTCAGAATTTGCAACAAGAAATCATCTGCCTCATGATAAACAAGATCAAATATTATCATATTTATGTTTGAGATTCAAAACAGAAGGATTAAAGCAGCAAGAAACAATAAATTGTATGCCGAAAGCAATTCGCGCAAGCATTACACATCATTTGTTTTTTCCTGTTGTTCAGAATTCATACCTCTTCCAAAGAGTTTCACATGACTTTCTTTTTCAACTGGTTACAGAAATGGAAGCAGAGTATTTTCCACCAAAAGAAGATGTTATACTACAAAATGAGTCTCCAACAGATCTTTACATGTTGGTTTCAGGAGCAGTGGAACTCATTCATAATGTCAATGGTCGTGATCAAGTTTTGAAGACGGACATATGTGCCGGAGATACAATCGGAGAGATTGGAGTTTTATACAATAGACCACAACCTTTCACTGTTAGGACCAAAAAGCTTTCACAAATTTTAAGACTTGGCAGAACTACATTGATGAATGCCCTTCATGCAAATCCAGAAGCAGCACCAATTATCATGACAAATCTTTTTATGAAGTTAAATGGACAAGAAGATTTGGGTTTTGAATATCAACCAATAGACACTAAATTGGCTCTTCATGGCATGCATGATGTGAACCATACAATTGCAAATTCATGTCTTGAATGTACAAAAAATTCACATAAATTATTGTATGAGATGATACCAAACATGGTTCAAAACCAGCCAGAACAAGAAGAAAATGAAAAGAATCTAAGTCCTGTTAGATGGAAACAGAAAGCAATAATAGAAAAGCAACAAAACAAGAGTCATGAAAATGGAAAGAAATTAGATGAACATATAATAGAGTTTAAGGAGACAGATGTTAGGAGTGACCAAATATCTTTAGGAACAAGTAATCATCCAATTGAGAGAAAAAAAGCAATTTTTGCCAATAAGAGAGTTACCATTCACTATTTAGGCCAAGACAAAGCTACCTTACAAGGAAAACATGGAAAGTTGATAATTCTACCTGATTCATTGGAAGAGCTTCTCAAGATTGTTGGAGAAAAGTTTGGAGGGCCAAAGCCGAACAAAATAATGAACGCGGAGAATGCAGAGATAGATGACTTGTGTGTCATTCGAGATGGTGACCATCTGTTTTTTCGTTGCAGCGACAGTGAATTTTTGAGCTAA 2118 0.3631 MSFSCVKKIFKRFWDDEFQTDLLPSLGARINQEIELRRYIISPFNPKYSTTELTSDGLVIYCRTWETWLIVLVIYSAWIYPFQFAFLTYKIDTLFIIDNIVNGFFAIDIVMTFFVAYLDDHSYLLVGEPKKIAVRYLCTWFIFDVCSTAPFQSISSLFTHNSSEIGFKILNMLRLWRIRRVSSLFARLEKNIHYNYFWTRCLKLVAVTLFAVHCAGCLNYLIADRYHDPKRTWIGAVYPNFKEMSLWDRYVTSMYWSIVTLTTTGYGDLHANNTGEMLFDIFYMLFNLGLTAYIIGNMTNLVVQWTSHTRNFRDTVRAASEFATRNHLPHDKQDQILSYLCLRFKTEGLKQQETINCMPKAIRASITHHLFFPVVQNSYLFQRVSHDFLFQLVTEMEAEYFPPKEDVILQNESPTDLYMLVSGAVELIHNVNGRDQVLKTDICAGDTIGEIGVLYNRPQPFTVRTKKLSQILRLGRTTLMNALHANPEAAPIIMTNLFMKLNGQEDLGFEYQPIDTKLALHGMHDVNHTIANSCLECTKNSHKLLYEMIPNMVQNQPEQEENEKNLSPVRWKQKAIIEKQQNKSHENGKKLDEHIIEFKETDVRSDQISLGTSNHPIERKKAIFANKRVTIHYLGQDKATLQGKHGKLIILPDSLEELLKIVGEKFGGPKPNKIMNAENAEIDDLCVIRDGDHLFFRCSDSEFLS* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1478 705 SUPERFAMILY cAMP-binding domain-like 307 497 IPR018490 -
Tpr7g1478 705 Gene3D - 64 303 - -
Tpr7g1478 705 ProSiteProfiles KHA domain profile. 628 705 IPR021789 -
Tpr7g1478 705 PANTHER POTASSIUM CHANNEL KAT1 1 696 - -
Tpr7g1478 705 Gene3D Helix hairpin bin 304 370 - -
Tpr7g1478 705 Pfam KHA, dimerisation domain of potassium ion channel 627 696 IPR021789 -
Tpr7g1478 705 ProSiteProfiles cAMP/cGMP binding motif profile. 380 500 IPR000595 -
Tpr7g1478 705 SUPERFAMILY Voltage-gated potassium channels 62 303 - -
Tpr7g1478 705 Pfam Cyclic nucleotide-binding domain 400 484 IPR000595 -
Tpr7g1478 705 PANTHER POTASSIUM CHANNEL AKT1 1 696 IPR045319 GO:0005249|GO:0006813
Tpr7g1478 705 Gene3D Jelly Rolls 373 502 IPR014710 -
Tpr7g1478 705 SMART cnmp_10 380 498 IPR000595 -
Tpr7g1478 705 CDD CAP_ED 380 490 IPR000595 -
Tpr7g1478 705 Pfam Ion transport protein 63 309 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr7g1478 705 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr7g1478 705 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr7g1478 705 PRINTS EAG/ELK/ERG potassium channel family signature 250 267 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr7g1478 705 PRINTS EAG/ELK/ERG potassium channel family signature 276 287 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr7g1478 705 PRINTS EAG/ELK/ERG potassium channel family signature 294 303 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1478 Tpr-Chr7 16362267 16369220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1478 1 696 Ion Channels AT5G46240 58.051 0.0 818